PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OWM80172.1

Organism

Punica granatum

Taxonomic ID

22663

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica

Family

C2H2

Protein Properties

Length: 394aa MW: 44405 Da PI: 5.6704

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OWM80172.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.3	1.4e-05	5	27	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC+ C+k Fs+ L+ H+++H OWM80172.1 5 HKCKLCSKNFSNGRALRAHMKSH 27 79********************9 PP
2	zf-C2H2	12.6	0.00043	263	285	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C+k+F++ L H +H OWM80172.1 263 YRCETCKKTFRSYQALGGHRASH 285 9***********99999998887 PP
3	zf-C2H2	14.5	0.0001	319	341	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++Cp+C+++Fs+ L H r+H OWM80172.1 319 HECPYCSRVFSSGQALGGHKRSH 341 79******************999 PP

Sequence ? help Back to Top
Protein Sequence Length: 394 aa Download sequence
MEKRHKCKLC SKNFSNGRAL RAHMKSHSLN LPISEEMPPA KESDRKLVYP TESASSASGS 60 SSSSSSSEEE DEAVKVDQGY GLRENPKKSF RLADPEFSFA GSVVLQDRES ETESSKNPTR 120 RRSKRIRNCS PFSSSSPSLL DTKTKIKLRS NFSNRVDESP GYRIVEPEPV SSSISDATTE 180 EDVAFCLMML SRDKWKGQKR TKDEPKFRPV EDLEVEEEEE EEEEEEGEDD EEDEEEETDE 240 SEEHQHCKVM TNDNNNNKSR GKYRCETCKK TFRSYQALGG HRASHKKAQL LPPSAIQLAA 300 QRPTPPHRAV KVEPVVKVHE CPYCSRVFSS GQALGGHKRS HTTDYGTSIT VPIPKKKFGD 360 TLIDLNLPAP VEDDDFVELS AVSDAEFVYH HTTR

Sequence ? help Back to Top

Protein Sequence Length: 394 aa Download sequence

MEKRHKCKLC SKNFSNGRAL RAHMKSHSLN LPISEEMPPA KESDRKLVYP TESASSASGS  60
SSSSSSSEEE DEAVKVDQGY GLRENPKKSF RLADPEFSFA GSVVLQDRES ETESSKNPTR  120
RRSKRIRNCS PFSSSSPSLL DTKTKIKLRS NFSNRVDESP GYRIVEPEPV SSSISDATTE  180
EDVAFCLMML SRDKWKGQKR TKDEPKFRPV EDLEVEEEEE EEEEEEGEDD EEDEEEETDE  240
SEEHQHCKVM TNDNNNNKSR GKYRCETCKK TFRSYQALGG HRASHKKAQL LPPSAIQLAA  300
QRPTPPHRAV KVEPVVKVHE CPYCSRVFSS GQALGGHKRS HTTDYGTSIT VPIPKKKFGD  360
TLIDLNLPAP VEDDDFVELS AVSDAEFVYH HTTR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G60580.1	8e-50	C2H2 family protein