PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OWM80186.1
Organism
Punica granatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica
Family YABBY
Protein Properties Length: 224aa    MW: 24736.3 Da    PI: 8.4035
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OWM80186.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY230.34.9e-71161882170
       YABBY   2 dvfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakas......qllaaeshldeslkee..lleelkveeenlksnvekeesa 92 
                 d+ s ++q+ yv+CnfC+t+lavsvP +slfk+vtvrCGhC++llsvn++         ++ +  ++l++++  +  llee ++   ++ +n++    +
  OWM80186.1  16 DHLSPTDQLRYVHCNFCDTVLAVSVPCSSLFKTVTVRCGHCANLLSVNMRGLLlpspaaTAATQLQQLGHTFFAPhnLLEEIRNVPPTVLMNHHF---P 111
                 78899*******************************************99887444322333333444444433223444444444444433333...3 PP

       YABBY  93 stsvsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170
                 +  +s+ +  +  +e +pr+  v+rPPekrqrvPsaynrfikeeiqrika+nPdishreafsaaaknWahfP+ihfgl
  OWM80186.1 112 NPAESVLQ-LHGGSEPIPRPALVNRPPEKRQRVPSAYNRFIKEEIQRIKAQNPDISHREAFSAAAKNWAHFPHIHFGL 188
                 33333333.3567889***999******************************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    
MMSSSSSSSS SSLSPDHLSP TDQLRYVHCN FCDTVLAVSV PCSSLFKTVT VRCGHCANLL  60
SVNMRGLLLP SPAATAATQL QQLGHTFFAP HNLLEEIRNV PPTVLMNHHF PNPAESVLQL  120
HGGSEPIPRP ALVNRPPEKR QRVPSAYNRF IKEEIQRIKA QNPDISHREA FSAAAKNWAH  180
FPHIHFGLMP EQSVKKPTMC QQEGEDMLRK DGLFAPANLG VSPY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45190.13e-82YABBY family protein