PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OWM80704.1

Organism

Punica granatum

Taxonomic ID

22663

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica

Family

C2H2

Protein Properties

Length: 424aa MW: 48872.1 Da PI: 7.0264

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OWM80704.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.9	0.00034	160	183	1	23
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 y C+ Cg+ ++++ +Lk+H + H OWM80704.1 160 YICSVCGRKCKTNLDLKKHFKQlH 183 89*****************98766 PP

Sequence ? help Back to Top
Protein Sequence Length: 424 aa Download sequence
METVSFSIAS PPLLLRNPME RLRSSQSLFL RTPKPSLQTR LALTHKHQQG SYADAAGRIR 60 SLALSDIDMV RNKQGVYTPK PKKVVVLWDL DNKPPRGPPY EAATALKRVA ERFGEVVEVS 120 AYANRHAFIH LPRWVVDERR ERKQVDILER KGIVSPPQPY ICSVCGRKCK TNLDLKKHFK 180 QLHEREREKK LNRMRSLKGK KRQKYREKYI SGNHKYNEAA RVLVRPKVGY GLAAELRRAG 240 VYVKTVEDKP QAADWALKRQ MQHSMSRGID WLLLVSDDSD FSDMLRKARE ADLGTVVIGD 300 WDRALGRHAD LWVPWNGVES GEVRDEDLVP RKRVEREELN RDEDGNGLFS ISVFDEDSED 360 SELDSVVNEI IRGRSGFRDM RILAFSEGEE EGDEEQEEGE WVTEEANGDY FSEDEDFERD 420 GGYF

Sequence ? help Back to Top

Protein Sequence Length: 424 aa Download sequence

METVSFSIAS PPLLLRNPME RLRSSQSLFL RTPKPSLQTR LALTHKHQQG SYADAAGRIR  60
SLALSDIDMV RNKQGVYTPK PKKVVVLWDL DNKPPRGPPY EAATALKRVA ERFGEVVEVS  120
AYANRHAFIH LPRWVVDERR ERKQVDILER KGIVSPPQPY ICSVCGRKCK TNLDLKKHFK  180
QLHEREREKK LNRMRSLKGK KRQKYREKYI SGNHKYNEAA RVLVRPKVGY GLAAELRRAG  240
VYVKTVEDKP QAADWALKRQ MQHSMSRGID WLLLVSDDSD FSDMLRKARE ADLGTVVIGD  300
WDRALGRHAD LWVPWNGVES GEVRDEDLVP RKRVEREELN RDEDGNGLFS ISVFDEDSED  360
SELDSVVNEI IRGRSGFRDM RILAFSEGEE EGDEEQEEGE WVTEEANGDY FSEDEDFERD  420
GGYF

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	139	180	RRERKQVDILERKGIVSPPQPYICSVCGRKCKTNLDLKKHFK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G52010.1	1e-156	C2H2 family protein