PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OWM80891.1

Organism

Punica granatum

Taxonomic ID

22663

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica

Family

MIKC_MADS

Protein Properties

Length: 210aa MW: 24074.3 Da PI: 8.3113

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OWM80891.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	91.5	4e-29	9	58	1	50
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 k+ien++nrqvtfskRrng++KKA+ELSvLCda+v++ii+s t kly+y OWM80891.1 9 KKIENTTNRQVTFSKRRNGLFKKAHELSVLCDAKVSIIIISGTEKLYDYV 58 68**********************************************97 PP
2	K-box	60.9	5.3e-21	71	141	1	71
K-box 1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKne 71 yq++sg++++++++e++q+ l+kLk+ +++++ e+R++ G++L+++++ eL Leq++e++ iR++K++ OWM80891.1 71 YQTKSGTDVWSSHYEKMQETLNKLKEVNRKIRLEIRRRHGQSLNNMTYGELCGLEQEMESAAHVIRERKHR 141 8999*****************************************************************86 PP

Sequence ? help Back to Top
Protein Sequence Length: 210 aa Download sequence
MARGKIEIKK IENTTNRQVT FSKRRNGLFK KAHELSVLCD AKVSIIIISG TEKLYDYVSP 60 SSSTKQLLDL YQTKSGTDVW SSHYEKMQET LNKLKEVNRK IRLEIRRRHG QSLNNMTYGE 120 LCGLEQEMES AAHVIRERKH RNSIQVNKNL LHAIDAEEDD LSYELCGNIT DDPIIGYFNE 180 GSRLFALRLQ PNQPNLQDGG SCITTYPLLD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G54340.1	3e-68	MIKC_MADS family protein