PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OWM80904.1
Organism
Punica granatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica
Family ARF
Protein Properties Length: 906aa    MW: 99694.8 Da    PI: 5.2203
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OWM80904.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B378.85.7e-25147248199
                 EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                 f+k+lt sd++++g +++p++ ae+        ++++ + ++l+++d++ ++W++++iyr++++r++lt+GW+ Fv a++Lk+gD+v+F   ++++ +l
  OWM80904.1 147 FCKTLTASDTSTHGGFSVPRRAAEKLfppldytMQPP-T-QELVVRDLHDNTWTFRHIYRGQPKRHLLTTGWSLFVGAKRLKAGDSVLFI--RDEKSQL 241
                 99*********************999*****954444.4.38************************************************..4577778 PP

                 EEEEE-S CS
          B3  93 vvkvfrk 99 
                 +v+v+r+
  OWM80904.1 242 LVGVRRA 248
                 *****97 PP
2Auxin_resp115.64.2e-38273356183
  Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                 aahaa+++s F+++YnPra++seFvv+++k++ka++ +++svGmRf m+fete+s +rr++Gt++g+sdldp+rWp+SkWr+L+
  OWM80904.1 273 AAHAAANRSSFTIFYNPRACPSEFVVPLAKYRKAIYgTRISVGMRFGMMFETEESGKRRYMGTIIGISDLDPLRWPGSKWRNLQ 356
                 79**********************************9*********************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 906 aa     Download sequence    
MMGTTVEGKI KTLQPQQPST LLEEMKLLKE MQEQSGSRKS INSELWHACA GPLVSLPQLG  60
SLVYYFPQGH SEQVAVSTRR SATSQIPNYP NLPSQLMCQV HNVTLHADKE TDEIYAQMSL  120
QPVTSEKDVF PVPDFGLKPS KHPSEFFCKT LTASDTSTHG GFSVPRRAAE KLFPPLDYTM  180
QPPTQELVVR DLHDNTWTFR HIYRGQPKRH LLTTGWSLFV GAKRLKAGDS VLFIRDEKSQ  240
LLVGVRRANR QQATLPSSVL SADSMHIGIL AAAAHAAANR SSFTIFYNPR ACPSEFVVPL  300
AKYRKAIYGT RISVGMRFGM MFETEESGKR RYMGTIIGIS DLDPLRWPGS KWRNLQVEWD  360
EPGCVDKQNR VSPWEIETPE SLFIFPSLTS GLKRPFLAAE TEWGNLIKRP LMQFPENGSG  420
TVLPYPSVSN LCSEQLMKMM MKPPQMACFP PIPRDADSKI VVPLQELNNT RSETVNQKQD  480
QSRAISSSPE VDATVKAESL AKAENQASEA EKSKLDPDNK IGPAPLNQAP PVGESNEGNV  540
PTGLCNQHNN HISPLNIPNQ NQAPVVLQPT SSPALQPIDA LHTDPNGLQG SSALITADEW  600
ILNPAMAQSL AGLMRPQGTL PVLGMQDPSS SFMDPISQIL PSMGPEMWDP SGNFRYLSQV  660
DQLTPLPEQD PANLCCISNS VSVRDLSDES NNQSGIYSCF NGGSSVVDPS VSSAILDEFC  720
GMKDARFQNP SDCMIGTFSS SQDVQSQITS ASLVDTKPIS RHDFPDNSGV TSSSNVDFDD  780
SNILKNSCSW QQVAPPPPMR TYTKVQKAGS VGRSIDVTNF KNYEELLSAI ECMFGLEGLL  840
NDPRGSGWKL VYVDYENDVL LVGDDPWEEF VGCVRCIRIL SPAEVQQMSE EGMKLLNSAT  900
AHGINI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19850.10.0ARF family protein