PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OWM80985.1

Organism

Punica granatum

Taxonomic ID

22663

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica

Family

HD-ZIP

Protein Properties

Length: 231aa MW: 26355.2 Da PI: 4.616

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OWM80985.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	57.3	2.6e-18	23	73	6	56
S--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 6 tftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++ +q+++Le+ Fe ++++ +++++LA++lgL+ rqV +WFqNrRa++k OWM80985.1 23 RLGLHQVKALEKNFEVENKLEPDRKAKLAEELGLQPRQVAIWFQNRRARYK 73 56679*********************************************9 PP
2	HD-ZIP_I/II	125.5	2.4e-40	20	111	2	93
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 kkrrl +qvk+LE++Fe e+kLep+rK++la+eLglqprqva+WFqnrRAR+ktkqlE+dy+ L+++yd+lk + ++Le+e+e+L +el+e OWM80985.1 20 KKRRLGLHQVKALEKNFEVENKLEPDRKAKLAEELGLQPRQVAIWFQNRRARYKTKQLERDYSILRANYDSLKLDYDNLEQEKEALDAELRE 111 9**************************************************************************************99986 PP

Sequence ? help Back to Top
Protein Sequence Length: 231 aa Download sequence
MLDSLDREEC GDEVGPVGDK KRRLGLHQVK ALEKNFEVEN KLEPDRKAKL AEELGLQPRQ 60 VAIWFQNRRA RYKTKQLERD YSILRANYDS LKLDYDNLEQ EKEALDAELR ELKLKLHKRN 120 VGGHDSSSVP AEDSPVSDSA NNASVGDNNA IGIIPEPFGE IKEEDPNSNL GEPFVSSSSF 180 YNPPAHQMLS WIQFSGLRSM KMDEQQEFEG AEESCDIFSV DQAPTRHWYF P

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	20	49	KKRRLGLHQVKALEKNFEVENKLEPDRKAK
2	68	76	RRARYKTKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G40060.1	6e-44	HD-ZIP family protein