PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OWM81031.1
Organism
Punica granatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica
Family M-type_MADS
Protein Properties Length: 192aa    MW: 21416.5 Da    PI: 8.9029
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OWM81031.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF56.24.5e-182965844
                HHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS
      SRF-TF  8 nrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44
                 r vtfskRr+g++ KA EL+vLC+a+va++ fs+  
  OWM81031.1 29 HRRVTFSKRRKGLFEKAAELCVLCGAKVAIVTFSEGR 65
                799*******************************865 PP
Sequence ? help Back to Top
Protein Sequence    Length: 192 aa     Download sequence    
MADTPKAPPR RSTQGRQKIE IKKREKVDHR RVTFSKRRKG LFEKAAELCV LCGAKVAIVT  60
FSEGRKAFCF GNHETDAMLE GYLNGRNLGE IEPSGAYVRA LNESKQLYLE ASMRLESERA  120
KGKCPVRLAR PEGFWWDTPM DGLGLEELEY YHNALERMMQ IVQAKIEEGS NTGPGPAPGL  180
GFIGTAGEQS LL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12239KKREKVDHRRVTFSKRRK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.19e-29M-type_MADS family protein