PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OWM81056.1

Organism

Punica granatum

Taxonomic ID

22663

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica

Family

LBD

Protein Properties

Length: 158aa MW: 17354.4 Da PI: 7.8794

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OWM81056.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	146.1	1e-45	14	113	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 +CaaCk+lrr+Ca+dCv+apyfpa++p+kfa vh++FGasnv kll++lpe++r+da+ss+vyeA+ar+rdPvyG+vg i++lqqq++ l+++la++++ OWM81056.1 14 PCAACKLLRRRCAQDCVFAPYFPADDPQKFASVHRVFGASNVNKLLQELPEHQRSDAVSSMVYEANARVRDPVYGCVGAISSLQQQVDVLQNQLAVAQA 112 7**********************************************************************************************9997 PP DUF260 100 e 100 e OWM81056.1 113 E 113 6 PP

Sequence ? help Back to Top
Protein Sequence Length: 158 aa Download sequence
MKESGGRKQG AVSPCAACKL LRRRCAQDCV FAPYFPADDP QKFASVHRVF GASNVNKLLQ 60 ELPEHQRSDA VSSMVYEANA RVRDPVYGCV GAISSLQQQV DVLQNQLAVA QAEVVHMQLR 120 QGVSSNSRES GSSPSSRANN SHQQSSYYSM DMEESLWS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G31320.1	1e-59	LBD family protein