PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OWM81121.1

Organism

Punica granatum

Taxonomic ID

22663

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica

Family

C2H2

Protein Properties

Length: 459aa MW: 50016.1 Da PI: 6.6889

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OWM81121.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.3	2.7e-05	61	83	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C++Cgk F ++ L H r H OWM81121.1 61 YSCEHCGKEFESRKALGGHVRIH 83 99******************999 PP
2	zf-C2H2	21.1	7.9e-07	109	130	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 +C +Cgk Fs++ +L H+r+H OWM81121.1 109 TCDICGKEFSSPRSLYGHMRSH 130 6********************9 PP
3	zf-C2H2	11.6	0.00087	324	346	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C++C+ksF + L H ++H OWM81121.1 324 YRCNICDKSFLTYQALGGHKSVH 346 9*********9988888887776 PP

Sequence ? help Back to Top
Protein Sequence Length: 459 aa Download sequence
MNLVRFLGWS LSRSMDEDKP HLEVVRHDGR LLLKIKKGGD GDGALSIAEK DPQDQPIAMS 60 YSCEHCGKEF ESRKALGGHV RIHKDGLAVK KGWVKAAPDG NAEEDQGATC DICGKEFSSP 120 RSLYGHMRSH PEREWRGMQP PGSASHESQS SQTSTELDAV KASDHIDCSN TAVTGPVPEP 180 ALVDLSKTKF LLSWSMTGKR GRKSSIISSG SLGQGYSCSK PEDWSQEEQE AAKILHSLAN 240 APISSSQANP PIKPSPHEDF LGSGPAPRSS MEPCTDNGNA GHADTGKQKK RNKKRNFSEL 300 ETAEVNEKRI DHDDDPATSS PEKYRCNICD KSFLTYQALG GHKSVHKRAK NTHSQSEQLQ 360 DHHPAPKPSS QHDNEMDRSD SSDSHECEIC KKRFQTGQAL GGHKRLHYTG SPEAKATSSD 420 EASGTGQRKK PFDFDLNGPP PAEAEEEEEG VLGLGSSTH

Sequence ? help Back to Top

Protein Sequence Length: 459 aa Download sequence

MNLVRFLGWS LSRSMDEDKP HLEVVRHDGR LLLKIKKGGD GDGALSIAEK DPQDQPIAMS  60
YSCEHCGKEF ESRKALGGHV RIHKDGLAVK KGWVKAAPDG NAEEDQGATC DICGKEFSSP  120
RSLYGHMRSH PEREWRGMQP PGSASHESQS SQTSTELDAV KASDHIDCSN TAVTGPVPEP  180
ALVDLSKTKF LLSWSMTGKR GRKSSIISSG SLGQGYSCSK PEDWSQEEQE AAKILHSLAN  240
APISSSQANP PIKPSPHEDF LGSGPAPRSS MEPCTDNGNA GHADTGKQKK RNKKRNFSEL  300
ETAEVNEKRI DHDDDPATSS PEKYRCNICD KSFLTYQALG GHKSVHKRAK NTHSQSEQLQ  360
DHHPAPKPSS QHDNEMDRSD SSDSHECEIC KKRFQTGQAL GGHKRLHYTG SPEAKATSSD  420
EASGTGQRKK PFDFDLNGPP PAEAEEEEEG VLGLGSSTH

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G27730.1	2e-17	C2H2 family protein