PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OWM81230.1
Organism
Punica granatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica
Family GRAS
Protein Properties Length: 540aa    MW: 60629.5 Da    PI: 5.0698
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OWM81230.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS418.27.3e-1281705391373
        GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 
                 l++lL++cA+a+s+++ ++ ++l+++ ++ +s +g+p+qRl ay+ e+L ar  +s++++y+al+++e +   s++ l+++++++e++P+lkf++++aN
  OWM81230.1 170 LKQLLVACAKAISDEKIKQFDQLIEKARNKVSISGEPIQRLGAYLIEGLVARKESSGTNIYRALRCREPE---SKDMLSYMQILYEICPYLKFGYMAAN 265
                 689******************************************************************9...9************************* PP

        GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrv 196
                  aI e   +e+ +HiiDf+i qG+QW++LlqaLa+Rp+gpp++RiTg+++p s   +   l +++ rLa + e++ +p+ef+  + +   +++le+L v
  OWM81230.1 266 GAIAETCRHEDYIHIIDFQIAQGTQWLTLLQALAARPGGPPRVRITGIDDPVSRfaRGAGLDAVEGRLAAISEKFCIPVEFHG-LPEFAPKVTLEMLCV 363
                 ***************************************************999999**************************.599999********* PP

        GRAS 197 kpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreiv 295
                 +p+Eal+Vn+ l lh+++desv+++++rd +L+lvkslsPkvv+vveqe+++n+++F++rf e+l+yy a+f+s++++lpr+s+eri+vE+++l+r+iv
  OWM81230.1 364 RPREALVVNFPLVLHHMPDESVDVNNPRDGLLRLVKSLSPKVVTVVEQESNTNTAPFMNRFEETLDYYLAMFESIDVTLPRDSKERINVEQHCLARDIV 462
                 *************************************************************************************************** PP

        GRAS 296 nvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                 n++a eg+er+erhe l+kWr+r+++aGF+p+pls+++++ +  llr ++ + y++ e++gs++lgWk+r+L+s+SaW
  OWM81230.1 463 NIIASEGRERVERHELLGKWRSRFTMAGFRPYPLSSFVNSVIANLLRCYS-EHYSLVEKDGSMLLGWKRRNLISASAW 539
                 **********************************************9999.66************************* PP
Sequence ? help Back to Top
Protein Sequence    Length: 540 aa     Download sequence    
MDSHPLYRYS GAGAGLPSRF ETLRFDVNNS LNSPFSANSD SENATPLSES REQPSSTDNF  60
SGVSPSYNSS LDTSSYFERS SPSVEACEVF SQNENYTLWE LEEVLMGPQM SGREEKEDLA  120
TPPNVSFRKD ASIPEPEGKA TTRKWDSEQP GSQFLVAENP SPQDIPSGDL KQLLVACAKA  180
ISDEKIKQFD QLIEKARNKV SISGEPIQRL GAYLIEGLVA RKESSGTNIY RALRCREPES  240
KDMLSYMQIL YEICPYLKFG YMAANGAIAE TCRHEDYIHI IDFQIAQGTQ WLTLLQALAA  300
RPGGPPRVRI TGIDDPVSRF ARGAGLDAVE GRLAAISEKF CIPVEFHGLP EFAPKVTLEM  360
LCVRPREALV VNFPLVLHHM PDESVDVNNP RDGLLRLVKS LSPKVVTVVE QESNTNTAPF  420
MNRFEETLDY YLAMFESIDV TLPRDSKERI NVEQHCLARD IVNIIASEGR ERVERHELLG  480
KWRSRFTMAG FRPYPLSSFV NSVIANLLRC YSEHYSLVEK DGSMLLGWKR RNLISASAWY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.11e-169GRAS family protein