PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OWM81282.1

Organism

Punica granatum

Taxonomic ID

22663

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica

Family

MYB

Protein Properties

Length: 548aa MW: 60041 Da PI: 7.333

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OWM81282.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	46.1	1.1e-14	35	82	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+ Ed +l ++vk+ G g+W+++ + + R++k+c++rw +++ OWM81282.1 35 KGPWTAAEDAILMEYVKKNGEGNWNAVQKNTSLSRCGKSCRLRWTNHR 82 79*******************************************997 PP
2	Myb_DNA-binding	52.7	9.6e-17	88	131	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g++T+eE+ l++++++qlG++ W++ a+ ++ gRt++++k++w++ OWM81282.1 88 KGPFTPEEERLILQLHAQLGNK-WARMAAQLP-GRTDNEIKNYWNT 131 79******************.*****.*********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 548 aa Download sequence
MVAHSGGSHT DNAVPSSSSA SGGNGTVVAK KELKKGPWTA AEDAILMEYV KKNGEGNWNA 60 VQKNTSLSRC GKSCRLRWTN HRRPNLKKGP FTPEEERLIL QLHAQLGNKW ARMAAQLPGR 120 TDNEIKNYWN TRIKRRFRQG LLLYPNNIAF QKPTTSPPMQ LEAQPATTPI RGRPPLQIPT 180 RTISQFLAQS HSPSSTLSPT LRPVPLSPHS YSQFETNFTH SMSLFDPSPP LSPSPSGLPS 240 SHGLWSPHSL PSPHGLPSPH GAPSPHSLPS PHGLLSSHSP TILSPNLVLK SYQDANISFP 300 GFSFPLQTSP LQLPTANSFQ FTPLTFNLNS PQGQQRTQPP CTVYTSMKSV ELPSNQLFAS 360 QVEKPVFEPE PEPEPKPDEQ ETRSKPSPPH SSSSIGMLED LLQQAEALIS NKNSQDQNDF 420 FQPQDQKFNF SQKSGHAWDD VAIGSDNSSE AGSGIKNEVK DENRSLHEDL TALLQSIPSP 480 ANILEVYNNL GDNLNTPHLD FGSGVVVSED SLGIDMQQIA SIFQVDANPT DISRQAASCP 540 WNSLPRIY

Sequence ? help Back to Top

Protein Sequence Length: 548 aa Download sequence

MVAHSGGSHT DNAVPSSSSA SGGNGTVVAK KELKKGPWTA AEDAILMEYV KKNGEGNWNA  60
VQKNTSLSRC GKSCRLRWTN HRRPNLKKGP FTPEEERLIL QLHAQLGNKW ARMAAQLPGR  120
TDNEIKNYWN TRIKRRFRQG LLLYPNNIAF QKPTTSPPMQ LEAQPATTPI RGRPPLQIPT  180
RTISQFLAQS HSPSSTLSPT LRPVPLSPHS YSQFETNFTH SMSLFDPSPP LSPSPSGLPS  240
SHGLWSPHSL PSPHGLPSPH GAPSPHSLPS PHGLLSSHSP TILSPNLVLK SYQDANISFP  300
GFSFPLQTSP LQLPTANSFQ FTPLTFNLNS PQGQQRTQPP CTVYTSMKSV ELPSNQLFAS  360
QVEKPVFEPE PEPEPKPDEQ ETRSKPSPPH SSSSIGMLED LLQQAEALIS NKNSQDQNDF  420
FQPQDQKFNF SQKSGHAWDD VAIGSDNSSE AGSGIKNEVK DENRSLHEDL TALLQSIPSP  480
ANILEVYNNL GDNLNTPHLD FGSGVVVSED SLGIDMQQIA SIFQVDANPT DISRQAASCP  540
WNSLPRIY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G26930.1	9e-65	MYB family protein