PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OWM81347.1
Organism
Punica granatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica
Family GRAS
Protein Properties Length: 524aa    MW: 58394.3 Da    PI: 6.3078
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OWM81347.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS425.73.8e-1301535241374
        GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 
                 l+e+L++cA+av ++d  +++ l+++l++++s +g+p+qRl ay++e+L arla+s+s++++al+++e       + l++++ ++e++P++kf++l aN
  OWM81347.1 153 LKEVLFACAKAVGENDSIRIECLVSELRTMVSVSGEPIQRLGAYMLEGLVARLASSGSSICRALKCREPV--AGPNLLSYMHELYEMCPYFKFGYLSAN 249
                 5789****************************************************************97..699999999****************** PP

        GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrv 196
                  aI +a++ e+rvHiiDf+i qG QW++L+qaLa+Rp+g+p++RiTg++++ s   +  +le +g+rLa++Ae+++vpfef+  v+    ++++e+L +
  OWM81347.1 250 GAIADAMKDEDRVHIIDFQIAQGSQWISLIQALATRPGGAPKIRITGIDDSFSAyaRGGRLEIVGRRLAQLAESCNVPFEFHS-VTVPAFEVKFEHLGI 347
                 **************************************************777688999************************.577778899****** PP

        GRAS 197 kpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreiv 295
                 +pgE++aVn+ l+lh+++desv++e++rd++++l kslsP+vv++ve e+++n+++F  rfle+++yysa+f s+++ lpr++++ri+vE+++l+r+iv
  OWM81347.1 348 RPGETIAVNFPLMLHHVPDESVCTENHRDRLIRLSKSLSPRVVTLVEVESNTNTAPFYPRFLETFDYYSAVFHSIDVALPRDNRKRISVEQHCLARDIV 446
                 *************************************************************************************************** PP

        GRAS 296 nvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                 n++aceg er+erhe l+kWr+r+ +aGF+p pls++++++++ ll+ + ++ y++ee++g+l+lgW++rpLvs +aW+
  OWM81347.1 447 NLIACEGMERFERHEPLGKWRSRFAMAGFRPHPLSSFVNATIRGLLKGYCEN-YTLEEQDGALLLGWMNRPLVSSCAWT 524
                 **************************************************55.*************************6 PP
Sequence ? help Back to Top
Protein Sequence    Length: 524 aa     Download sequence    
MQDASQKTRI AGLCSSRFYD ELDHEVDFSH SPKCSNESSS RGTTFSSRAV DRVSKFESSS  60
TSGSCGQLVH NYSSTLTFSP EGSPTSQLDS RSHRGLQKDS HSVDDLSLKL RELEKVMLGS  120
NPEILDLYDV NVSVEAEKWK DLIEMISIGE GGLKEVLFAC AKAVGENDSI RIECLVSELR  180
TMVSVSGEPI QRLGAYMLEG LVARLASSGS SICRALKCRE PVAGPNLLSY MHELYEMCPY  240
FKFGYLSANG AIADAMKDED RVHIIDFQIA QGSQWISLIQ ALATRPGGAP KIRITGIDDS  300
FSAYARGGRL EIVGRRLAQL AESCNVPFEF HSVTVPAFEV KFEHLGIRPG ETIAVNFPLM  360
LHHVPDESVC TENHRDRLIR LSKSLSPRVV TLVEVESNTN TAPFYPRFLE TFDYYSAVFH  420
SIDVALPRDN RKRISVEQHC LARDIVNLIA CEGMERFERH EPLGKWRSRF AMAGFRPHPL  480
SSFVNATIRG LLKGYCENYT LEEQDGALLL GWMNRPLVSS CAWT
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.10.0GRAS family protein