PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OWM81483.1
Organism
Punica granatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica
Family LBD
Protein Properties Length: 229aa    MW: 25029.7 Da    PI: 5.9138
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OWM81483.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260124.17.2e-3971071100
      DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 
                 +C aCk+lrrkC+++Cv+apyf++eq +++fa++hk+FGasn++kll++lp  +r +a+ ++ yeA+ar++dP+yG+v++i++lqqq+ +l+a+la+lk
  OWM81483.1   7 PCGACKFLRRKCVRGCVFAPYFCHEQgAAHFAAIHKVFGASNISKLLSNLPVGDRCEAAVTISYEAQARLQDPIYGCVSHIFALQQQVFNLQAQLASLK 105
                 7*************************89********************************************************************999 PP

      DUF260  99 ee 100
                 e+
  OWM81483.1 106 EQ 107
                 87 PP
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    
MTSSGSPCGA CKFLRRKCVR GCVFAPYFCH EQGAAHFAAI HKVFGASNIS KLLSNLPVGD  60
RCEAAVTISY EAQARLQDPI YGCVSHIFAL QQQVFNLQAQ LASLKEQAAQ GLSAMRANTG  120
AERIPTAQQL LDMQSWSQLS NSSSLPQFGF NDISNATNYH GSFSMDSSSN SMGDYKNNVS  180
LLREDNSSFG SFEDASHRSS DVQAGNGQWS FQDATDEFES VAFDYARQW
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58190.19e-67LBD family protein