PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OWM81764.1

Organism

Punica granatum

Taxonomic ID

22663

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica

Family

MYB

Protein Properties

Length: 405aa MW: 43470.5 Da PI: 5.3359

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OWM81764.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	55.7	1.1e-17	60	105	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W++eEd +l ++v ++G+++W++Iar + gR++k+c++rw + OWM81764.1 60 KGPWSPEEDAILSQLVSKFGPRNWSLIARGIS-GRSGKSCRLRWCNQ 105 79****************************.*********985 PP
2	Myb_DNA-binding	58.4	1.6e-18	112	156	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r+++T eEd ++v+a++ +G++ W++Iar ++ gRt++ +k++w++ OWM81764.1 112 RKPFTDEEDRIIVRAHAIHGNK-WASIARLLP-GRTDNAIKNHWNST 156 789*****************.*****.*********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 405 aa Download sequence
MEIEMHTDDK VIPEIDVSIA AAGGADAASG DEGGAEGAGG GDGSGSSSGG GGKAGKDRVK 60 GPWSPEEDAI LSQLVSKFGP RNWSLIARGI SGRSGKSCRL RWCNQLDPAV KRKPFTDEED 120 RIIVRAHAIH GNKWASIARL LPGRTDNAIK NHWNSTLSRR IWEFDHILDA GKTTDDASLD 180 QMKASSEETL SCGDANSFKS LEGKDVSSLE NTTEPCEDKS ITVEKFNHEV REPPTLFRPV 240 ARVSAFNVYN ASDGPEPASS FPGPIPMPGQ TLRPDSGFCK LLEGVYGERM VPHHCGYGCC 300 KTDGGPRPDA QTPLLGPEFV EYSEPPPFPS YELAAIATDI SNIAWLKSGL ENGSVRGMNN 360 TAMRVTSGVF RVQVGHPEEG RVNNSVRFED GKNKLMGTMA NVLST

Sequence ? help Back to Top

Protein Sequence Length: 405 aa Download sequence

MEIEMHTDDK VIPEIDVSIA AAGGADAASG DEGGAEGAGG GDGSGSSSGG GGKAGKDRVK  60
GPWSPEEDAI LSQLVSKFGP RNWSLIARGI SGRSGKSCRL RWCNQLDPAV KRKPFTDEED  120
RIIVRAHAIH GNKWASIARL LPGRTDNAIK NHWNSTLSRR IWEFDHILDA GKTTDDASLD  180
QMKASSEETL SCGDANSFKS LEGKDVSSLE NTTEPCEDKS ITVEKFNHEV REPPTLFRPV  240
ARVSAFNVYN ASDGPEPASS FPGPIPMPGQ TLRPDSGFCK LLEGVYGERM VPHHCGYGCC  300
KTDGGPRPDA QTPLLGPEFV EYSEPPPFPS YELAAIATDI SNIAWLKSGL ENGSVRGMNN  360
TAMRVTSGVF RVQVGHPEEG RVNNSVRFED GKNKLMGTMA NVLST

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G09230.1	3e-90	MYB family protein