PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OWM81975.1

Organism

Punica granatum

Taxonomic ID

22663

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica

Family

HD-ZIP

Protein Properties

Length: 266aa MW: 29482.4 Da PI: 6.5135

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OWM81975.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	58	1.6e-18	105	159	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ ++++eq +Lee F+++++++ +++ LA++l+L rqV vWFqNrRa+ k OWM81975.1 105 RKKLRLSREQSMVLEETFKEHSTLNPKQKLALAEQLNLRPRQVEVWFQNRRARTK 159 678899***********************************************98 PP
2	HD-ZIP_I/II	125.3	2.8e-40	105	194	1	91
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 +kk+rls+eq+ +LEe+F+e+++L+p++K +la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l++en+rL+kev+eLr +l OWM81975.1 105 RKKLRLSREQSMVLEETFKEHSTLNPKQKLALAEQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCENLTRENRRLQKEVQELR-AL 194 69*************************************************************************************9.55 PP

Sequence ? help Back to Top
Protein Sequence Length: 266 aa Download sequence
MAMGNMNVAL LMKEIELYEC IIPFLPSLEM SLEGGIDVNR APLLYPEDDN AASSPNSTVS 60 SISAGKRAER ELMGDHEHEG ERTSCSQGSD EGDGGGTGGA DGDGRKKLRL SREQSMVLEE 120 TFKEHSTLNP KQKLALAEQL NLRPRQVEVW FQNRRARTKL KQTEVDCEYL KRCCENLTRE 180 NRRLQKEVQE LRALKLSPQL YKNMSPPTTL TMCPSCERVA ALSCSSSPAT SAPIGPFSRQ 240 KSGQQSVPIN PWAALQMHQE PANPPP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	154	162	RRARTKLKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G60390.1	5e-90	HD-ZIP family protein