PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OWM82396.1

Organism

Punica granatum

Taxonomic ID

22663

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica

Family

C2H2

Protein Properties

Length: 483aa MW: 52318.8 Da PI: 9.7223

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OWM82396.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.3	1.4e-05	26	48	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H OWM82396.1 26 FVCEICNKGFQRDQNLQLHRRGH 48 89*******************88 PP
2	zf-C2H2	12.8	0.00035	103	125	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k + +s+ k H +t+ OWM82396.1 103 WKCEKCSKKYAVQSDWKAHSKTC 125 58*****************9998 PP

Sequence ? help Back to Top
Protein Sequence Length: 483 aa Download sequence
MYEFEVDPNA EVIALSPKTL MATNRFVCEI CNKGFQRDQN LQLHRRGHNL PWKLKQRAKD 60 AIIKKKVYIC PEKTCVHHDP SRALGDLTGI KKHFSRKHGE KKWKCEKCSK KYAVQSDWKA 120 HSKTCGTREY KCDCGTLFSR KDSFITHRAF CDALAEESAR FTSVATANLN LRNNDTSIIN 180 GQSGLPHGFG INRGVQDIAG ITQLARSMIR PDASGMAAGG NSLAAIHVEN NSRLSLWLNQ 240 ANSQLTNPGN VLPNSSLFGS SSSTGLPEML QMGTANNLFG SSSMPNFGGF TQFPSSSGAL 300 SANLSLSPLK EEVSKKSNLV ETSSSAYGCQ NLQPRPAMSA TALLQKAAQI GSSRSNHSPI 360 FGNTFRVMSS SPNSSTSGFN ALMNQSRTNN DENQQPPHLI ADVKQPKDFA SDSSLSSVTR 420 TTSCVIDQAR MKLHPGSNSA EQNGLTRDFL GVGEVSRSLS PDELARLASM SSAMGLGQFG 480 SNS

Sequence ? help Back to Top

Protein Sequence Length: 483 aa Download sequence

MYEFEVDPNA EVIALSPKTL MATNRFVCEI CNKGFQRDQN LQLHRRGHNL PWKLKQRAKD  60
AIIKKKVYIC PEKTCVHHDP SRALGDLTGI KKHFSRKHGE KKWKCEKCSK KYAVQSDWKA  120
HSKTCGTREY KCDCGTLFSR KDSFITHRAF CDALAEESAR FTSVATANLN LRNNDTSIIN  180
GQSGLPHGFG INRGVQDIAG ITQLARSMIR PDASGMAAGG NSLAAIHVEN NSRLSLWLNQ  240
ANSQLTNPGN VLPNSSLFGS SSSTGLPEML QMGTANNLFG SSSMPNFGGF TQFPSSSGAL  300
SANLSLSPLK EEVSKKSNLV ETSSSAYGCQ NLQPRPAMSA TALLQKAAQI GSSRSNHSPI  360
FGNTFRVMSS SPNSSTSGFN ALMNQSRTNN DENQQPPHLI ADVKQPKDFA SDSSLSSVTR  420
TTSCVIDQAR MKLHPGSNSA EQNGLTRDFL GVGEVSRSLS PDELARLASM SSAMGLGQFG  480
SNS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G03150.1	1e-109	C2H2 family protein