PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OWM82482.1

Organism

Punica granatum

Taxonomic ID

22663

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica

Family

HD-ZIP

Protein Properties

Length: 256aa MW: 29205.9 Da PI: 8.9488

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OWM82482.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	59.4	5.8e-19	74	126	4	56
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 + ++t++qle Le+ F+++ +++ +++ +L+++lgL+ rq+ vWFqNrRa++k OWM82482.1 74 KKKLTSNQLESLERSFQEEIKLDPDRKMRLSRELGLQPRQIAVWFQNRRARWK 126 5689************************************************9 PP
2	HD-ZIP_I/II	111	8.2e-36	72	163	1	92
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 e+k++l+++q+++LE+sF+ee kL+p+rK++l+reLglqprq+avWFqnrRAR+k+kqlE+ y+aLk++++ +++e+ +L++ev +L++ ++ OWM82482.1 72 ERKKKLTSNQLESLERSFQEEIKLDPDRKMRLSRELGLQPRQIAVWFQNRRARWKAKQLERLYDALKQEFEVISREKLKLQEEVLRLKAMIR 163 69*************************************************************************************98876 PP

Sequence ? help Back to Top
Protein Sequence Length: 256 aa Download sequence
MDWDGSSLLR SSNFVNSRPA ESSPALGSFL LNYTFDQFPP HGMEVKHSMA TSDPQHAAAV 60 GMDKFGIGCQ AERKKKLTSN QLESLERSFQ EEIKLDPDRK MRLSRELGLQ PRQIAVWFQN 120 RRARWKAKQL ERLYDALKQE FEVISREKLK LQEEVLRLKA MIRDQAATGS KKQVRGAGYT 180 EVSGEETVES TSTDIRRHYT NKSARGSQQI IGDQSSYLLS ALEEYNNSDS KVEEYLYWIW 240 KYSCASGGFM ALLGNS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	121	129	RRARWKAKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G03790.1	3e-46	HD-ZIP family protein