PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OWM82556.1
Organism
Punica granatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica
Family B3
Protein Properties Length: 222aa    MW: 24495 Da    PI: 6.5094
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OWM82556.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B385.25.6e-275110198
                 EEEE-..-HHHHTT-EE--HHH.HTT........---..--SEEEEEE..TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeeh........ggkkeesktltled..esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                 f+k ltpsdv+k++rlv+pk++ae++        +g+  +   l++ed   sgr W+++++y+ +s++yvltkGW+++vk++gL +gD+v F ++  ++
  OWM82556.1   5 FEKPLTPSDVGKLNRLVIPKQHAEKNfplegrpgSGD--SALLLSFEDeeASGRWWQFRYSYWSSSQSYVLTKGWNRYVKEKGLGAGDIVSFGRHCADS 101
                 99***************************88865444..44578888854577****************************************887788 PP

                 E..EEEEE- CS
          B3  90 felvvkvfr 98 
                 ++ ++++ r
  OWM82556.1 102 GHWFIGWKR 110
                 777777765 PP
Sequence ? help Back to Top
Protein Sequence    Length: 222 aa     Download sequence    
MVPMFEKPLT PSDVGKLNRL VIPKQHAEKN FPLEGRPGSG DSALLLSFED EEASGRWWQF  60
RYSYWSSSQS YVLTKGWNRY VKEKGLGAGD IVSFGRHCAD SGHWFIGWKR GQQQNNAGGG  120
IRAAAAEVED IALSSGAAED NAGMGSVDNA VRDNRTTEVA GNSRRLRLFG VNLECQLDHG  180
STPSTIETSP FLSHSATHHH LDSDQSYWSS DCQFYGNVNK LI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36080.13e-54B3 family protein