PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OWM82596.1

Organism

Punica granatum

Taxonomic ID

22663

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica

Family

M-type_MADS

Protein Properties

Length: 653aa MW: 69427.8 Da PI: 6.3624

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OWM82596.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	44.8	1.6e-14	11	51	3	43
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43 i n+s r+ ++ kRr g+lKK +EL++LC++ ++ i++s++ OWM82596.1 11 IVNDSARKASLKKRRMGLLKKVSELCILCGVTACAIVYSPN 51 6799***********************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 653 aa Download sequence
MTRKKVKLGW IVNDSARKAS LKKRRMGLLK KVSELCILCG VTACAIVYSP NEAEPVFFPP 60 TRPEVEEILN RFEQVPEMEK NRKMMNQESY LKERAGKHQD QLRKNLKKNR EMQMNHFLHQ 120 MHRAAKPYTE FAHTQLHGLR FYVEERWREC RRRMQFFHQA TGEPLPPPPA HIAGADEEME 180 QATEHNLPQW AHWFSGMMQN EPNVPGGRNV PGGRNVPSGR SVPSGRNVPS GSSTDKGKAV 240 LHAYEGSSSH AGEMVAPTEP QGGIGQANQL ALLRGSVGGE SGVRDFGLPR EQAGVQGQGM 300 LVPYGVTRGT GGSYGWEAHH GDGEGIGFGH GMIIPHGEAG GGSSGHNMGK HDWNAEGTGA 360 GHIYLLPHQE IGGSIYMYST NPQDQNVGGS ESGLALIPSP GGAQGSVEGS RWTQQDWNVA 420 STDTGYSMVF PNPYVDVGGS RGGQGMQQYD WNVGGTSSGH GMMPSHGDAA GSSNVYGQNP 480 QQQNVEGPNT GFGMMLPRGE GGSSSGGFDM MLPLGGGGSS SGGFGTMLPQ GEGGSSSSRF 540 NMMLPQGEGG SGSGGFGMML PQGEGGSGSG GYAMEQQQGN ASGTSNEQQA TMLALGDGRG 600 SNFPAGLPPG DPMNIEEPTD PWAPYYSAGS SRGAGNDAQQ PGEEKDWPNY FSS

Sequence ? help Back to Top

Protein Sequence Length: 653 aa Download sequence

MTRKKVKLGW IVNDSARKAS LKKRRMGLLK KVSELCILCG VTACAIVYSP NEAEPVFFPP  60
TRPEVEEILN RFEQVPEMEK NRKMMNQESY LKERAGKHQD QLRKNLKKNR EMQMNHFLHQ  120
MHRAAKPYTE FAHTQLHGLR FYVEERWREC RRRMQFFHQA TGEPLPPPPA HIAGADEEME  180
QATEHNLPQW AHWFSGMMQN EPNVPGGRNV PGGRNVPSGR SVPSGRNVPS GSSTDKGKAV  240
LHAYEGSSSH AGEMVAPTEP QGGIGQANQL ALLRGSVGGE SGVRDFGLPR EQAGVQGQGM  300
LVPYGVTRGT GGSYGWEAHH GDGEGIGFGH GMIIPHGEAG GGSSGHNMGK HDWNAEGTGA  360
GHIYLLPHQE IGGSIYMYST NPQDQNVGGS ESGLALIPSP GGAQGSVEGS RWTQQDWNVA  420
STDTGYSMVF PNPYVDVGGS RGGQGMQQYD WNVGGTSSGH GMMPSHGDAA GSSNVYGQNP  480
QQQNVEGPNT GFGMMLPRGE GGSSSGGFDM MLPLGGGGSS SGGFGTMLPQ GEGGSSSSRF  540
NMMLPQGEGG SGSGGFGMML PQGEGGSGSG GYAMEQQQGN ASGTSNEQQA TMLALGDGRG  600
SNFPAGLPPG DPMNIEEPTD PWAPYYSAGS SRGAGNDAQQ PGEEKDWPNY FSS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	3	25	RKKVKLGWIVNDSARKASLKKRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G48670.1	5e-30	M-type_MADS family protein