PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OWM82659.1
Organism
Punica granatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica
Family C3H
Protein Properties Length: 359aa    MW: 38218.2 Da    PI: 8.3527
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OWM82659.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH23.41e-07161185226
                 -S---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                 kt+ C+ +     Ck+Gd+C+FaHg
  OWM82659.1 161 KTRMCNKYNTAEGCKFGDKCHFAHG 185
                 89**********************8 PP
2zf-CCCH391.3e-12326350126
                 --S---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                 ykt+lC++fa+ G C +G+rC+FaHg
  OWM82659.1 326 YKTKLCDNFAK-GSCTFGERCNFAHG 350
                 9**********.*************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    
MSKGLSLSIY TKTRAVTGAF DEIEVWFLLG GNFVIAAGWR EWDYNSGCYV LFRLSNWVYG  60
DLRNDDSTPA CLGFWASAFN IDHFNGLSTQ WATPSGMGPK STISITSGCQ FGEACHFSHY  120
VPGGYNAVAQ MMNLPPAVPP PSRAMPGPPP VPNGSSSPAV KTRMCNKYNT AEGCKFGDKC  180
HFAHGHWELG KPVAASFDDP RAMAPIPPRF GSRMELLPPP SFGGPVSSFG ASATAKISVD  240
ASLAGAIIGK GGVNSKQICR QTGAKLSIRD HESDPSLRNI ELEGTFEQIK EASALVRELI  300
VNVSAMSSHA KGHGSQGGPA PSGSNYKTKL CDNFAKGSCT FGERCNFAHG AAELRRSAV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06770.17e-58C3H family protein