PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OWM82974.1

Organism

Punica granatum

Taxonomic ID

22663

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica

Family

C2H2

Protein Properties

Length: 467aa MW: 52277.6 Da PI: 8.9459

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OWM82974.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	18.5	5.5e-06	65	87	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C++C++ F r nL+ H r+H OWM82974.1 65 YVCEICNQGFQRDQNLQMHRRRH 87 9*********************9 PP
2	zf-C2H2	16	3.5e-05	142	164	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k + +s++k H++t+ OWM82974.1 142 WVCEKCSKGYAVQSDYKAHLKTC 164 58*******************98 PP
3	zf-C2H2	10.9	0.0015	172	190	5	23
TTTEEESSHHHHHHHHHHT CS zf-C2H2 5 dCgksFsrksnLkrHirtH 23 dCg++Fsr +++ H+ t+ OWM82974.1 172 DCGRVFSRVESFIEHQDTC 190 9***************987 PP

Sequence ? help Back to Top
Protein Sequence Length: 467 aa Download sequence
MLENNSSHIP TACIVNPSPE QFITCSGNGT NTNTNKRKRR PAGTPDPDAE VISLSPKTLL 60 ESDRYVCEIC NQGFQRDQNL QMHRRRHKVP WKLLKRESPV AKKRVFVCPE PSCLHHDPCH 120 ALGDLVGIKK HYRRKHSNHK QWVCEKCSKG YAVQSDYKAH LKTCGTRGHS CDCGRVFSRV 180 ESFIEHQDTC NMGRLRSETR ALQPACLSRT ASSPSPSGDT NFSTAPWPPA PPACNLNMFP 240 KPRDSMFLLS PTTADSSPKN NISNNSNNNG RQYHNLELQL STASNPIDVS VSIERDDNHS 300 TQLQLSIGSS DIGRSSPRDQ SEFKDKPTVS TSRIKEQARE HLRLAMAEKA FAEDARRQAR 360 RQIELAEQEF ANAKRIRQQA QSELDRALVL KEQATKQVNS TILQITCHAC KHQFQARAAT 420 ALPAPPLPPP PDENSLVLSY NNMSSAGTEG EIEKNNDRAK NDNVQYN

Sequence ? help Back to Top

Protein Sequence Length: 467 aa Download sequence

MLENNSSHIP TACIVNPSPE QFITCSGNGT NTNTNKRKRR PAGTPDPDAE VISLSPKTLL  60
ESDRYVCEIC NQGFQRDQNL QMHRRRHKVP WKLLKRESPV AKKRVFVCPE PSCLHHDPCH  120
ALGDLVGIKK HYRRKHSNHK QWVCEKCSKG YAVQSDYKAH LKTCGTRGHS CDCGRVFSRV  180
ESFIEHQDTC NMGRLRSETR ALQPACLSRT ASSPSPSGDT NFSTAPWPPA PPACNLNMFP  240
KPRDSMFLLS PTTADSSPKN NISNNSNNNG RQYHNLELQL STASNPIDVS VSIERDDNHS  300
TQLQLSIGSS DIGRSSPRDQ SEFKDKPTVS TSRIKEQARE HLRLAMAEKA FAEDARRQAR  360
RQIELAEQEF ANAKRIRQQA QSELDRALVL KEQATKQVNS TILQITCHAC KHQFQARAAT  420
ALPAPPLPPP PDENSLVLSY NNMSSAGTEG EIEKNNDRAK NDNVQYN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	36	41	KRKRRP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01940.1	1e-148	C2H2 family protein