PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OWM83017.1
Organism
Punica granatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica
Family LBD
Protein Properties Length: 249aa    MW: 27016.7 Da    PI: 8.3563
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OWM83017.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26086.14.8e-274105197
      DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                 +C++C+vlr++C ++C+++ ++      ++q++++ +++k++G++ +++ll+a p+  r+d+++sl+yeA+ r+ +P+yG++g+++++++ql+q ++e 
  OWM83017.1   4 SCNGCRVLRKGCGDGCPIRHCLrwiktSQSQANATIFLAKFYGRAGLINLLNAGPDPLRHDVFKSLLYEACGRIINPIYGSTGLLWTGSWQLCQDAVES 102
                 6*********************9999888999**************************************************************99998 PP

      DUF260  95 all 97 
                 +l 
  OWM83017.1 103 VLN 105
                 765 PP
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    
MRMSCNGCRV LRKGCGDGCP IRHCLRWIKT SQSQANATIF LAKFYGRAGL INLLNAGPDP  60
LRHDVFKSLL YEACGRIINP IYGSTGLLWT GSWQLCQDAV ESVLNGVPIT RIPDDSALAG  120
SGPPLQACDI RHVSKPNKGS SIRLHRVRSR GGFKRRPATK LAQAESVSRE SELSQGPIRC  180
SESDAVSAET EEASTSQLDE RAPAMEDGLE LELELTLGFD RTAKRACSEG KRTSGDGSEA  240
EKCQLRVGL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02550.16e-75LBD family protein