PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OWM83066.1
Organism
Punica granatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica
Family NF-YA
Protein Properties Length: 328aa    MW: 35853.9 Da    PI: 9.3189
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OWM83066.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA104.68.9e-33189245158
   CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                 d p+YVNaKQy++I++RRq+Rakle+++kl  ksrkpylheSRh hAl+R RgsgGrF
  OWM83066.1 189 DGPIYVNAKQYNGIMRRRQSRAKLEAQNKL-VKSRKPYLHESRHLHALNRVRGSGGRF 245
                 57****************************.**************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    
MAIRIQNLPE KNFNEGGPVF SMPNLSVNYP SWWVSNEHQI PLSLSSNLSS KSGSPTQKEN  60
HETKNLGLQL ADHESSSTQS LSHSQSGGLS SRDQSVSSEC GQDESCGKSV EDRMKPVFLY  120
GNNSDVTVNP SHADHTYQMV HVSYPPTDPY LAGLVNAYGP QAIIQPQMGS QAVGMPPTRV  180
PLPLNVPDDG PIYVNAKQYN GIMRRRQSRA KLEAQNKLVK SRKPYLHESR HLHALNRVRG  240
SGGRFLSTKK LQQANPQEDP SGQNSHRARG NDMFDPTTNC SEMTSVTNCN TFFHHADRAV  300
AGISGPVGVR RNGGPLLDAS GLRSSSVR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72830.18e-44NF-YA family protein