PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OWM83132.1

Organism

Punica granatum

Taxonomic ID

22663

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica

Family

C3H

Protein Properties

Length: 911aa MW: 99677.9 Da PI: 5.9963

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OWM83132.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	17.5	7.5e-06	498	521	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 k +lCr ++ G C+ G++CkF+H+ OWM83132.1 498 KIPLCR-HYIHGRCQEGEKCKFSHD 521 779*.6666***********7 PP
2	zf-CCCH	20	1.2e-06	555	575	5	25
--SGGGGTS--TTTTT-SS-S CS zf-CCCH 5 lCrffartGtCkyGdrCkFaH 25 +C fa G+C++Gd+C F+H OWM83132.1 555 PCTKFASEGFCSRGDSCLFSH 575 7******************** PP

Sequence ? help Back to Top
Protein Sequence Length: 911 aa Download sequence
MEDAQPQSPR RGFLPRRRSP LKSQTYRTLS RILSLFDDQN QPPRVVKFVP YQLPPGSLTL 60 DDFVLNDATE NTEHGTCDEG KMGDADVEKK DNFYEEKGGA VEESFGLSER GPNDTQMALS 120 RIADLMSMNE EEPGDLSKQK ENNAERTTDV VSLEDNASNR EQMIVDEFKS IVDRDFGPVQ 180 DDSSIENNAV CLDKTPCGDG TVELERQHEE QSGYKQNVVN EFKEVALMLQ DGEHLGQKGS 240 EDLCSSPSNN ALAPQPKESE VIESSFPRDN MLGADIAVQH NDSVASGDTL LAPIPMVVDD 300 QMEEGELSDS FETEVPAPAH SENSQVPDEK LGNRQVSEAI VQGVDASAYS LGIKSNTNDH 360 REGCVKETDG GNVGTKDDLD SCENARCLEA QGVDRRDNFI EDGKNEPQQP AAKEGAGMPA 420 TRSNDLVFYG DILEEKEIAD EGFTPEKDID VPKKRKRGPC SQERKEKKKK KERKKRAMKN 480 KELGVKRLKL QPVQMPKKIP LCRHYIHGRC QEGEKCKFSH DTVPITKSTP CCYFARRSCM 540 KGDNCPFDHQ LSNYPCTKFA SEGFCSRGDS CLFSHKVLPK DSTSAKMNAS GPESRPPSKT 600 NDASTIKRPD INSPSGRAAG AVLENLGISF KSMDQIIASS LGKAQVQKSN IGSHPVKDLT 660 VTPAIKSGQS NSSLKGRDEG RLKNQAKESS STGMVEETNE SMKTSPSVAS RGINFLSFAR 720 SSSNNANTGL PKSGNTITDK QVKADNQTLQ NGLEKVFGSH KTPARAQVMG SEELNNIVSV 780 KIPQNDAGTR KDATSPRTGD RSTQGEQMNK LQNSSVKACN MPTFPVITRQ RAESSTPSPY 840 KSMSNSTQKV LSSTLAFAAR CEKEMMMKSR SSGDHATCSS TSKETANGAN CNDTARAQKI 900 LDFLSSIGKK K

Sequence ? help Back to Top

Protein Sequence Length: 911 aa Download sequence

MEDAQPQSPR RGFLPRRRSP LKSQTYRTLS RILSLFDDQN QPPRVVKFVP YQLPPGSLTL  60
DDFVLNDATE NTEHGTCDEG KMGDADVEKK DNFYEEKGGA VEESFGLSER GPNDTQMALS  120
RIADLMSMNE EEPGDLSKQK ENNAERTTDV VSLEDNASNR EQMIVDEFKS IVDRDFGPVQ  180
DDSSIENNAV CLDKTPCGDG TVELERQHEE QSGYKQNVVN EFKEVALMLQ DGEHLGQKGS  240
EDLCSSPSNN ALAPQPKESE VIESSFPRDN MLGADIAVQH NDSVASGDTL LAPIPMVVDD  300
QMEEGELSDS FETEVPAPAH SENSQVPDEK LGNRQVSEAI VQGVDASAYS LGIKSNTNDH  360
REGCVKETDG GNVGTKDDLD SCENARCLEA QGVDRRDNFI EDGKNEPQQP AAKEGAGMPA  420
TRSNDLVFYG DILEEKEIAD EGFTPEKDID VPKKRKRGPC SQERKEKKKK KERKKRAMKN  480
KELGVKRLKL QPVQMPKKIP LCRHYIHGRC QEGEKCKFSH DTVPITKSTP CCYFARRSCM  540
KGDNCPFDHQ LSNYPCTKFA SEGFCSRGDS CLFSHKVLPK DSTSAKMNAS GPESRPPSKT  600
NDASTIKRPD INSPSGRAAG AVLENLGISF KSMDQIIASS LGKAQVQKSN IGSHPVKDLT  660
VTPAIKSGQS NSSLKGRDEG RLKNQAKESS STGMVEETNE SMKTSPSVAS RGINFLSFAR  720
SSSNNANTGL PKSGNTITDK QVKADNQTLQ NGLEKVFGSH KTPARAQVMG SEELNNIVSV  780
KIPQNDAGTR KDATSPRTGD RSTQGEQMNK LQNSSVKACN MPTFPVITRQ RAESSTPSPY  840
KSMSNSTQKV LSSTLAFAAR CEKEMMMKSR SSGDHATCSS TSKETANGAN CNDTARAQKI  900
LDFLSSIGKK K

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	452	471	PKKRKRGPCSQERKEKKKKK
2	453	471	KKRKRGPCSQERKEKKKKK
3	453	479	KKRKRGPCSQERKEKKKKKERKKRAMK
4	453	481	KKRKRGPCSQERKEKKKKKERKKRAMKNK
5	454	472	KKRKRGPCSQERKEKKKKK
6	454	480	KKRKRGPCSQERKEKKKKKERKKRAMK
7	454	482	KKRKRGPCSQERKEKKKKKERKKRAMKNK
8	454	474	KRKRGPCSQERKEKKKKKERK
9	455	473	KKRKRGPCSQERKEKKKKK
10	464	472	RKEKKKKKE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G08505.1	5e-07	C3H family protein