PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OWM83140.1

Organism

Punica granatum

Taxonomic ID

22663

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica

Family

LBD

Protein Properties

Length: 192aa MW: 21182.7 Da PI: 8.8694

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OWM83140.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	97.9	9.9e-31	32	129	2	99
DUF260 2 CaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 Ca+C+++rr+C+ dC apyfp ++ +++a +h+lFG n++k+++++ + er+ a++s++ +++a+ dPv+G++++i++l q++++++ela++++ OWM83140.1 32 CASCRHQRRRCKGDCKPAPYFPLSRYEEYASAHRLFGLGNITKIMNSAAHCERQGAAESILAQGRAWNLDPVHGSTEIIRTLLDQIDRHEKELAVVNQ 129 **********************************************************************************************9987 PP

Sequence ? help Back to Top
Protein Sequence Length: 192 aa Download sequence
MNAQRRGRGR GRDQGQGGSQ GPRGRAGRHQ TCASCRHQRR RCKGDCKPAP YFPLSRYEEY 60 ASAHRLFGLG NITKIMNSAA HCERQGAAES ILAQGRAWNL DPVHGSTEII RTLLDQIDRH 120 EKELAVVNQY LEYYRQGGQG ELDPSLAGQS SLVCQASLEE RGKMKAIDAH QMVNCDYGDP 180 SPSTAGTSKL EL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13850.1	1e-25	LBD family protein