PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OWM83143.1

Organism

Punica granatum

Taxonomic ID

22663

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica

Family

LBD

Protein Properties

Length: 207aa MW: 22636.2 Da PI: 8.757

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OWM83143.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	100.5	1.6e-31	47	145	2	100
DUF260 2 CaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 CaaC+++rr+C+ dC lapyfp ++ +++a +h+lFG n+ k+++++ + er+ a++s++ +++a+ dPv+G++++i++l ++++++++ela+++++ OWM83143.1 47 CAACRHQRRRCEGDCRLAPYFPLSRYEEYASAHRLFGLGNINKIMNSAAHCERQGAAESILAQGRAWNLDPVHGSTEIIRTLLEEIDRHEKELAVVNQH 145 ***********************************************************************************************9987 PP

Sequence ? help Back to Top
Protein Sequence Length: 207 aa Download sequence
MNAQGRGRGR GQDRGRGRGW GGGRGLGRGR GGGRELGRGR ASHHQTCAAC RHQRRRCEGD 60 CRLAPYFPLS RYEEYASAHR LFGLGNINKI MNSAAHCERQ GAAESILAQG RAWNLDPVHG 120 STEIIRTLLE EIDRHEKELA VVNQHLEYYC RGGQGELDPS LAGQSSIVCQ ASPEERGKMK 180 AIDAHQMVNC DYGDPSPSTA GTSKLEL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13850.1	1e-25	LBD family protein