PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OWM83288.1

Organism

Punica granatum

Taxonomic ID

22663

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica

Family

HD-ZIP

Protein Properties

Length: 230aa MW: 25970.1 Da PI: 6.7703

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OWM83288.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	59.3	6.2e-19	109	163	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ ++tkeq + Lee F+ ++++ ++++ LA++l+L++rqV vWFqNrRa+ k OWM83288.1 109 RKKLRLTKEQSDLLEENFKLHQTLAPAQKQALADQLNLKTRQVEVWFQNRRARSK 163 678899***********************************************98 PP
2	HD-ZIP_I/II	108.3	5.5e-35	109	197	1	89
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 +kk+rl+keq+ lLEe+F+ +++L p +K++la +L+l++rqv+vWFqnrRAR k+kq+E d+e+Lk+++d+l+++n+rLeke ++L++ OWM83288.1 109 RKKLRLTKEQSDLLEENFKLHQTLAPAQKQALADQLNLKTRQVEVWFQNRRARSKLKQTELDFEKLKKKCDSLSHRNRRLEKELHDLKS 197 69************************************************************************************996 PP

Sequence ? help Back to Top
Protein Sequence Length: 230 aa Download sequence
MADAEEACYT GLGLGLGVDA YNNYHNSKKG EPKMDGTLNI NSKRRDKPYM VSLELSLSVC 60 SEGDEEHQEE EEDRMAVDQV KAIAVGTSKV CSRDSIGNDH DGNDIDGCRK KLRLTKEQSD 120 LLEENFKLHQ TLAPAQKQAL ADQLNLKTRQ VEVWFQNRRA RSKLKQTELD FEKLKKKCDS 180 LSHRNRRLEK ELHDLKSTKD EQSSPCTVQL PSTSLLCSSC QKIIGASERN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	158	166	RRARSKLKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37790.1	3e-43	HD-ZIP family protein