PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OWM83828.1
Organism
Punica granatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica
Family MYB_related
Protein Properties Length: 123aa    MW: 13881.5 Da    PI: 4.7411
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OWM83828.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.82.6e-08651345
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45
                      WT+   + + +a +++ ++   +W+ Ia+ +g ++t++++k ++ 
       OWM83828.1  6 DWTAKQNKAFERALALYDKEtpdRWHNIAKAVGGNKTPEEVKTHYE 51
                     6*****************99************************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 123 aa     Download sequence    
MGSTSDWTAK QNKAFERALA LYDKETPDRW HNIAKAVGGN KTPEEVKTHY ELLVEDVKHI  60
ESGQVPFPKY SKSRGSTEMG SMGIGDELKR LDEKFETSMN GEAMAEEEER ARIDIIYVLA  120
TDV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39250.11e-32MYB_related family protein