PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OWM83871.1

Organism

Punica granatum

Taxonomic ID

22663

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica

Family

MYB_related

Protein Properties

Length: 840aa MW: 92852.8 Da PI: 4.6865

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OWM83871.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	26.8	1.2e-08	678	719	3	46
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rW++++ el++++++q+G++ + I + ++ ++t+ q+k+++ k OWM83871.1 678 RWSKQDTELFYEGIRQFGTD-LSMIKELFP-NLTRRQVKLKFKK 719 9*****************.*****.********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 840 aa Download sequence
MPQDSRPPPP RPSRQHHPPT LPPGSFRPFV LLRRPSAQDP ERVGEHRRWR RRCNPSLDPG 60 VGSAPAPSKF QPKARPGPKK GPLAPKPAAV PVKEKEVAPT PSESFRNADS SLSVPADLSS 120 GFLNIEKPTE PSTVGEVLHF KDPGHEHENV ECVARWQHED VVATSTSNIG ESQTFGNLTA 180 GIDSRGFDDD ENLGDLLPAP SELVGRAGVK FQPKAKARNQ VRASGSSAPL PGITDEVPGG 240 NEDWRSDFGK STEENEDILS QLESLDDLLT KSVNREEQTP CYSHEGNEPL TSRSNNVERE 300 GTVLSSEEPI TLSSMEIDAE KDSGLPIQNA PDSSHFTEAE VFPGLEAVEV FPDITNSSRG 360 KFKPKPMTRS GAKKPDSGTS QATLTDEDHH QDPLINYRSE YIDDGTVPGS IPEEIFQYSS 420 IGLGESNIRD STSQPIDDQM WNDHLEPSCF NESVSEEGQR PTISSMDNVD NEGGKKSLRQ 480 LRKRTAAHLV DESDGDAQDE SFYPNPYSSM DGEIEEGATR DENTLEKKKA TGKSKVSKSK 540 NGKPSRKRKG AEEATGQSKE VPKKKFAHTT RRSRRCVDKV LLQTPEEEID YQKVKIRDLI 600 LLAEHKERLA KKSAKASKNP PTGQSVEKAP DGDDSGNIEG SLPTEEGGNS SAQPSESIEP 660 GVILFNYQSF MDRTPSTRWS KQDTELFYEG IRQFGTDLSM IKELFPNLTR RQVKLKFKKE 720 ERQNPMRLFE ALGSRSKDHK HFEFVIERLQ SAAQAEKESK LENSEAMTVE EGSEDSNPET 780 EGVDEVAKPE KDEEEKGNGD TEGNNGELQS SFKSGEKGEW GEEEDDDDGD DFFSSYKSEL

Sequence ? help Back to Top

Protein Sequence Length: 840 aa Download sequence

MPQDSRPPPP RPSRQHHPPT LPPGSFRPFV LLRRPSAQDP ERVGEHRRWR RRCNPSLDPG  60
VGSAPAPSKF QPKARPGPKK GPLAPKPAAV PVKEKEVAPT PSESFRNADS SLSVPADLSS  120
GFLNIEKPTE PSTVGEVLHF KDPGHEHENV ECVARWQHED VVATSTSNIG ESQTFGNLTA  180
GIDSRGFDDD ENLGDLLPAP SELVGRAGVK FQPKAKARNQ VRASGSSAPL PGITDEVPGG  240
NEDWRSDFGK STEENEDILS QLESLDDLLT KSVNREEQTP CYSHEGNEPL TSRSNNVERE  300
GTVLSSEEPI TLSSMEIDAE KDSGLPIQNA PDSSHFTEAE VFPGLEAVEV FPDITNSSRG  360
KFKPKPMTRS GAKKPDSGTS QATLTDEDHH QDPLINYRSE YIDDGTVPGS IPEEIFQYSS  420
IGLGESNIRD STSQPIDDQM WNDHLEPSCF NESVSEEGQR PTISSMDNVD NEGGKKSLRQ  480
LRKRTAAHLV DESDGDAQDE SFYPNPYSSM DGEIEEGATR DENTLEKKKA TGKSKVSKSK  540
NGKPSRKRKG AEEATGQSKE VPKKKFAHTT RRSRRCVDKV LLQTPEEEID YQKVKIRDLI  600
LLAEHKERLA KKSAKASKNP PTGQSVEKAP DGDDSGNIEG SLPTEEGGNS SAQPSESIEP  660
GVILFNYQSF MDRTPSTRWS KQDTELFYEG IRQFGTDLSM IKELFPNLTR RQVKLKFKKE  720
ERQNPMRLFE ALGSRSKDHK HFEFVIERLQ SAAQAEKESK LENSEAMTVE EGSEDSNPET  780
EGVDEVAKPE KDEEEKGNGD TEGNNGELQS SFKSGEKGEW GEEEDDDDGD DFFSSYKSEL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	527	549	KKKATGKSKVSKSKNGKPSRKRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G39160.1	8e-43	MYB_related family protein