PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OWM84112.1

Organism

Punica granatum

Taxonomic ID

22663

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica

Family

MYB

Protein Properties

Length: 264aa MW: 29699.9 Da PI: 8.0279

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OWM84112.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	48.4	2.2e-15	16	63	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+ Ed++l+d+vk+ G g W ++ ++ g++R++k+c++rw++yl OWM84112.1 16 KGAWTAIEDQILIDYVKKNGEGKWGRVIKETGLRRCGKSCRLRWLNYL 63 79********************************************97 PP
2	Myb_DNA-binding	49	1.4e-15	69	113	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+ + +E+el+v+++k+lG++ W++Ia +++ gRt+ ++k++w+ + OWM84112.1 69 RGNISDDEEELIVRLHKLLGNR-WSLIAGRLP-GRTDGDIKNYWNRV 113 7899****************.*****.*********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 264 aa Download sequence
MGRKPRPTHL KDGLKKGAWT AIEDQILIDY VKKNGEGKWG RVIKETGLRR CGKSCRLRWL 60 NYLRPNIKRG NISDDEEELI VRLHKLLGNR WSLIAGRLPG RTDGDIKNYW NRVLKKKSKL 120 GSERPKTSKT KKEITIKDRC DEVAEAKDPE DQPLERNAAG SAVFAKASTG NTTISQAEGQ 180 LILPIMAVEN IDGCTWDFAA VDDKLNEIFV SEFVSPYSLE ANERPGECEN GFVIKPCVLS 240 SSDDLLGGEL SEQMMCEWAA ELMY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G40330.1	2e-52	MYB family protein