PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OWM84115.1

Organism

Punica granatum

Taxonomic ID

22663

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica

Family

MYB

Protein Properties

Length: 272aa MW: 31454.6 Da PI: 8.8885

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OWM84115.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	57.5	3e-18	15	62	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT+ Ed+ l d+v+ +G ++W+t+ar+ g++R++k+c++rw++yl OWM84115.1 15 RGAWTALEDKMLTDYVTVHGDRRWSTVAREAGLHRCAKSCRLRWLNYL 62 89********************************************97 PP
2	Myb_DNA-binding	54.1	3.5e-17	68	113	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+ T+eE++l+++++k+lG++ W++Ia +++ gRt++++k++w+++l OWM84115.1 68 RGNITKEEEDLIIRLHKLLGNR-WSLIAGRLP-GRTDNEIKNYWHSHL 113 7999****************.*****.**********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 272 aa Download sequence
MGRGPNRGKG GKLNRGAWTA LEDKMLTDYV TVHGDRRWST VAREAGLHRC AKSCRLRWLN 60 YLRPDIKRGN ITKEEEDLII RLHKLLGNRW SLIAGRLPGR TDNEIKNYWH SHLAKKQKVR 120 KFDNKIVNNQ KKMNIEKYSE LEKPSDLLRN DITMSRFLNG SISLDHARLE DESSKLEHSK 180 SGIDRSPMMT VEGSGQFKMD LLVEDFDLSG INIDISFTRL CDYEASLIGS TCRGRPNEAG 240 EDFFGHSWHW LPEGFLDNWS SEFASREDWN IM

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G35550.1	1e-52	MYB family protein