PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OWM84117.1

Organism

Punica granatum

Taxonomic ID

22663

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica

Family

MYB

Protein Properties

Length: 267aa MW: 30205.9 Da PI: 5.88

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OWM84117.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	54.2	3.4e-17	15	62	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+ Ed++l d+v+ +G ++W+ +a+ g+ R++k+c++rw++yl OWM84117.1 15 KGAWTALEDKILRDYVTAHGDRRWNIVAKDAGLSRCAKSCRLRWLNYL 62 79********************************************97 PP
2	Myb_DNA-binding	52.3	1.3e-16	68	112	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+ T++E++l+++++k+lG++ W++Ia +++ gRt++++k++w++ OWM84117.1 68 RGNITEDEEDLIIRLHKLLGNR-WSLIAGRLP-GRTDNEIKNYWHTN 112 7999****************.*****.*********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 267 aa Download sequence
MGRGPNSWKG GKLNKGAWTA LEDKILRDYV TAHGDRRWNI VAKDAGLSRC AKSCRLRWLN 60 YLRPDIKRGN ITEDEEDLII RLHKLLGNRW SLIAGRLPGR TDNEIKNYWH TNLAKKEKAR 120 RSGNATVDDR NLKVTKRAER EQPLGLLQPD ITKSYRSCDI NRSEDQGSEL KDSKLGNDLS 180 PTMSPEEGPG EFKAGFILED VDLSGIEFDL DFSGLSGVEA SDFLNPVRNW CKNEAGEDLI 240 GESSRWLPAG FLENWSSELA YGEDWII

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G35550.1	2e-53	MYB family protein