PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OWM84119.1

Organism

Punica granatum

Taxonomic ID

22663

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica

Family

MYB

Protein Properties

Length: 274aa MW: 30560.1 Da PI: 9.709

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OWM84119.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	52.5	1.1e-16	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT+ Ed++l ++k +G g+W+ +++ g++R++k+c++rw++yl OWM84119.1 14 RGAWTAMEDKILTAYIKAHGEGNWRNLPKRAGLKRCGKSCRLRWLNYL 61 89********************************************97 PP
2	Myb_DNA-binding	50.4	4.9e-16	67	111	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+ + +E+el+++++k+lG++ W++Ia +++ gRt++++k++w++ OWM84119.1 67 RGNISRDEEELILRLHKLLGNR-WSLIAGRLP-GRTDNEIKNYWNTT 111 788999**************.*****.**********87 PP

Sequence ? help Back to Top
Protein Sequence Length: 274 aa Download sequence
MGRSPCCSKV GLNRGAWTAM EDKILTAYIK AHGEGNWRNL PKRAGLKRCG KSCRLRWLNY 60 LRPDIKRGNI SRDEEELILR LHKLLGNRWS LIAGRLPGRT DNEIKNYWNT TLGKKTRSQA 120 TSTPPPKETH KLSTKSTAKG QAPVSRTPVQ SAPLPTTVTL PQVVRAKPIP RGLMVPPIIS 180 DQIQAHRDSE FIRPVHNRSH NGLNEACVDD LCFLNAGLNG LVTRGKCIYD GDVTEPIPVD 240 KAMLENWNAH CGLGETDTLD MESLAFLLDP EDWS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38620.1	1e-62	MYB family protein