PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OWM84163.1

Organism

Punica granatum

Taxonomic ID

22663

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica

Family

LBD

Protein Properties

Length: 213aa MW: 23042.2 Da PI: 6.8762

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OWM84163.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	136.2	1.2e-42	48	147	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 +CaaCk+lrr+Ca++Cvlapyfp ++p+kf ++h++FGasn++k+l++lpe++r da++s+vyeA ar+rdPvyG++g i +lq+q+++l+a+la++++ OWM84163.1 48 PCAACKILRRRCAEKCVLAPYFPPTEPAKFTIAHRVFGASNIIKFLQDLPESQRADAVASMVYEASARIRDPVYGCAGAICQLQKQVSELQAQLAKAQA 146 7***********************************************************************************************998 PP DUF260 100 e 100 e OWM84163.1 147 E 147 7 PP

Sequence ? help Back to Top
Protein Sequence Length: 213 aa Download sequence
MESTDNSTTV TNTSTPTSSS PGSLSPSSRS SSPPPPPPQP APPVIISPCA ACKILRRRCA 60 EKCVLAPYFP PTEPAKFTIA HRVFGASNII KFLQDLPESQ RADAVASMVY EASARIRDPV 120 YGCAGAICQL QKQVSELQAQ LAKAQAEIVN MQCQQANLVA MLCMEMAAQT SHPPMLQHLS 180 DTSLNSPRSH QNSPSFLDDA TNPSLFWEQM LWT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07900.1	9e-68	LBD family protein