PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OWM84279.1

Organism

Punica granatum

Taxonomic ID

22663

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica

Family

HB-PHD

Protein Properties

Length: 691aa MW: 78097.3 Da PI: 8.7808

Description

HB-PHD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OWM84279.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	36.9	6.4e-12	464	507	10	53
HHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHH CS Homeobox 10 eqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRa 53 e +e+L ++F++n ps++ re L+k+lgL ++V+ WF+N R+ OWM84279.1 464 EAVERLRQVFAENELPSRSVRENLSKELGLHPEKVSKWFKNARY 507 7899**************************************97 PP
2	PHD	40.7	5.2e-14	210	263	1	49
SBTTTSS..TCTTSSEEEBSS.SSSEEETTTSTSSSSHHSHHSS..TBSSHHHH CS PHD 1 rCkvCgk..sdeegelvlCdg.CkewfHlkClglkleseekpeg..ewlCeeCk 49 +C+ C + + +++++lCdg C++ fH+kCl ++l+se++p + w+C+ C+ OWM84279.1 210 FCAKCMQgeAAPDNDIILCDGpCNRGFHQKCLVPPLDSENIPPEdqGWFCKICD 263 699999976667******88***************99999*****7 PP

Sequence ? help Back to Top
Protein Sequence Length: 691 aa Download sequence
MPASDKLTSE GHGKSCQTDT EDGSELIASL KFKNKQKMIT GEKHKVRSTP QLKAEGSSLS 60 RKMAKNLSSK KGRPKKPKNS NNSNPFCEGN ASNDDVNVKK HRRRRKKRKR RKDLGELDEA 120 SRLQRRTRYL LIRMKMEQNL LDAYSGEGWK GQSREKIKPV KELLRAKKQI LKCKLGIRDA 180 IEQLDTLSSV GRIEESVIAP DGSIYHEHIF CAKCMQGEAA PDNDIILCDG PCNRGFHQKC 240 LVPPLDSENI PPEDQGWFCK ICDLKMEILD SVNAHLGTCF SSGSSWQEIF KEEAALSDAG 300 IETFDQDDEW PSDDSKDDDY RAGTSNSSGD TSTSTSLSWS LDHEVLSESQ KSEQEGTSYP 360 YSSDEFTDAD IIFGRRQRSA VDYKQLYNEM FGKDDAVAEQ VSEDEDWGPT KRRRREKESD 420 AANTLMTLHE GETALPRIEA GEADKEVPPE ATQSKRTIFR IPLEAVERLR QVFAENELPS 480 RSVRENLSKE LGLHPEKVSK WFKNARYMAL KTRKAERTVH NSDSPKACEE PAMETTGEKV 540 ADPVQLKDAL IGTGTYSTDI PVAALEKEIE LPSMVKTKKH KKGSFSSPAN NNSNEVDAQL 600 DENLRLKKHM KIIKSKLKKD KIPVESVSID GLQKPEAELE RLCRLKNRLE NLKQRLLRYR 660 PSKSKARGRP KLQKEPCVMY VPIAVVREKK A

Sequence ? help Back to Top

Protein Sequence Length: 691 aa Download sequence

MPASDKLTSE GHGKSCQTDT EDGSELIASL KFKNKQKMIT GEKHKVRSTP QLKAEGSSLS  60
RKMAKNLSSK KGRPKKPKNS NNSNPFCEGN ASNDDVNVKK HRRRRKKRKR RKDLGELDEA  120
SRLQRRTRYL LIRMKMEQNL LDAYSGEGWK GQSREKIKPV KELLRAKKQI LKCKLGIRDA  180
IEQLDTLSSV GRIEESVIAP DGSIYHEHIF CAKCMQGEAA PDNDIILCDG PCNRGFHQKC  240
LVPPLDSENI PPEDQGWFCK ICDLKMEILD SVNAHLGTCF SSGSSWQEIF KEEAALSDAG  300
IETFDQDDEW PSDDSKDDDY RAGTSNSSGD TSTSTSLSWS LDHEVLSESQ KSEQEGTSYP  360
YSSDEFTDAD IIFGRRQRSA VDYKQLYNEM FGKDDAVAEQ VSEDEDWGPT KRRRREKESD  420
AANTLMTLHE GETALPRIEA GEADKEVPPE ATQSKRTIFR IPLEAVERLR QVFAENELPS  480
RSVRENLSKE LGLHPEKVSK WFKNARYMAL KTRKAERTVH NSDSPKACEE PAMETTGEKV  540
ADPVQLKDAL IGTGTYSTDI PVAALEKEIE LPSMVKTKKH KKGSFSSPAN NNSNEVDAQL  600
DENLRLKKHM KIIKSKLKKD KIPVESVSID GLQKPEAELE RLCRLKNRLE NLKQRLLRYR  660
PSKSKARGRP KLQKEPCVMY VPIAVVREKK A

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	99	107	KKHRRRRKK
2	100	111	KHRRRRKKRKRR
3	102	110	KKHRRRRKK
4	102	108	RRRRKKR
5	102	113	RRRRKKRKRRKD
6	103	111	KKHRRRRKK
7	103	108	RRRKKR
8	103	109	RRRKKRK
9	103	109	RRRRKKR
10	103	114	RRRRKKRKRRKD
11	104	112	KKHRRRRKK
12	104	110	RRRRKKR
13	104	115	RRRRKKRKRRKD
14	105	110	RKKRKR
15	105	111	RRRRKKR
16	105	116	RRRRKKRKRRKD
17	106	111	KKRKRR
18	106	112	RRRRKKR
19	107	112	KRKRRK
20	108	113	RKRRKD
21	412	417	RRRREK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G29940.2	2e-90	HB-PHD family protein