PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OWM84299.1
Organism
Punica granatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica
Family C3H
Protein Properties Length: 422aa    MW: 46103.1 Da    PI: 7.6143
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OWM84299.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH25.42.5e-08100121426
                 ---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                 + C+f+ + G+C++GdrC++ H+
  OWM84299.1 100 KVCNFWVQ-GHCNFGDRCRYLHS 121
                 68******.*************7 PP
Sequence ? help Back to Top
Protein Sequence    Length: 422 aa     Download sequence    
MDVDGNKRVF QWLGAPSSAP NDSSKQKVCY HWRAGKCSRY PCPYLHRELP APTSNGGGPK  60
RFAEDSGSQF SRRGPNKFTG GSNTWGRVHG GNNTVRKAEK VCNFWVQGHC NFGDRCRYLH  120
SWSVGDSFSL LSQLEGHQKV VTGIAFPSGS DKLYTGGKDE SVRMWDCQSG QCILVVNLGA  180
EVGCMISEGP WIFVGLPNLV KAWNTQTSAE LSLNGPVGQV YAMVVGHSLL FAGTQDGSIL  240
AWKYNEITNN FEPAASLTGH SVAVVSLVVG ANRVYSGSMD NTIRVWNLET LQCIQVLSDH  300
TSVVMSVLCW DQFLLSCSLD KTIKVWAATE SGNLEVTYTH NEEHGILFLC GMHDLAGRPV  360
LLCACNDNSV RVYDLPSFSE RGKIFAKQEV RAIQAGPGGI FFTGDGTGQV KVWKWAESSG  420
QQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25440.10.0C3H family protein