PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OWM84641.1
Organism
Punica granatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica
Family M-type_MADS
Protein Properties Length: 366aa    MW: 41552.2 Da    PI: 8.5678
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OWM84641.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF52.18.2e-17951143
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43
                ++i  ++ r++tf kR++g+ KKAeE S+LC+++ ++ii+ ++
  OWM84641.1  9 EFITKDRSRKTTFEKRKKGLVKKAEEFSILCGVDTCMIIYNPD 51
                5799999*********************************987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    
MGRGKLALEF ITKDRSRKTT FEKRKKGLVK KAEEFSILCG VDTCMIIYNP DDSSGRGITI  60
WPQDPERVKQ VIDRYLNEGV DRRNRRAMGL TEFYMGRKRK ADNELAKIRS ANWAAKYPYS  120
EEPLNGLSLD QLQTVLSMLG MKLENAKKRL LAAKESAVMN ASGMVPMQMD EFKFNTSVHS  180
HINDYMPLDG IKPLEFQQLM IPYLPPLMDS NMMMNSSMMW SQVGDSSTNT NNSSSILANN  240
HNTNNNYYYN YPLTVPAYNR SFPQSTSFSI HHSGMDAMDK YDQMRGSHQV PENTMFDSSG  300
QGMLGNTSSM MMMMMPPQQQ PLMLQYPMMQ QGNTNSPPFA SPDQGLQFHD NGNSNNQFFP  360
SHGGNH
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11326KDRSRKTTFEKRKK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G55690.15e-22M-type_MADS family protein