PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OWM84837.1

Organism

Punica granatum

Taxonomic ID

22663

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica

Family

C3H

Protein Properties

Length: 1121aa MW: 129760 Da PI: 6.6406

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OWM84837.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	18.8	2.9e-06	703	722	6	25
-SGGGGTS--TTTTT-SS-S CS zf-CCCH 6 CrffartGtCkyGdrCkFaH 25 C+f+++tG C++G rC++ H OWM84837.1 703 CPFHLKTGACRFGQRCSRVH 722 ******************99 PP
2	zf-CCCH	24.4	5.2e-08	832	859	1	26
--S---SGGGGTS..--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartG..tCkyGdrCkFaHg 26 +k ++C ++r+ tC++G C+F+H+ OWM84837.1 832 WKVAICGEYMRSRykTCSHGTACNFIHC 859 899************************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 1121 aa Download sequence
MAVAAVSYCK PSPFLGRLSS RLGKPPPQLC TEKPSLTSRV YALFWRSRKP AEPQEVSLSL 60 GDFTLTTSDA LDVSARKSEP KRILLSIVSS ISEVSSDEWD ACALDATGPE RSNPFLFHGF 120 LSSLEEAGCA VKETGWMPRH IIAKDDSENV LGVVPLYLKS HSYGEFVFDH SWADAYYSYG 180 SRYYPKFQCC VPFTPVTGPR ILLRDSLYKD QVFDIIISTL KDLAAKSQVS SVHITFSSED 240 EWYSLKERGF LPRIGMQYHW RNRNYKSFDD FLMDMKQSKR KNIRQERKKA KHWDTFYTFY 300 RNTTDNKWGT PYLTREFFHS MGSKMGDKVL LVIAEEGDEL VAGALNLIGG DTIYGRLWGC 360 HPKAYYPSLH FEACYYQAIE AAIELNLNTV EAGAQGEHKI QRGYLPVKTY SSHYLPDEGF 420 RNAIGDFVMR EATQVELVMK LIRESGPFKE EFRLSLAFGM SELITGEYEE AGGGGGEGVE 480 EDRTCDGEKQ QLGAESMGSA SSRKEKRKAA KKMKRKQLRM EAAVREREEE EAKMNDPDEL 540 RRMEEAEREE EERRERERRE FEERERAWLE AMEKKRKEEE EGEEEERRRK ALEESQRLQE 600 VGNGNEQEEE DGDWEYIEEG PAEIIWQGNE IIVKKKRVKV PKKDATLQRL KEDADRPTSN 660 PLPPQSEAFA DCRNSSLPSA QQILENVAQQ VPNFGTEQDK AHCPFHLKTG ACRFGQRCSR 720 VHFYPDVSCT LLIRNMYNGP GLAWEQDEGL EHTDEEVERS YEEFYEDVHT EFLKFGEIVN 780 FKVCRNGSFH LRGNVYIHYK SLDSAVLAYQ SINGRFFASK QVNCEYVNVT RWKVAICGEY 840 MRSRYKTCSH GTACNFIHCF RNPGGDYEWA DWDKPPPRYW VKNMVALFGH SEEHGFERST 900 LESSGPSRNS NLTDVDSKRN QSQRSRSRET GSGRYHRNRG GENGFEISRS SEEYDIYDKK 960 QRKRTNGERK NEDKLSPRYS HRSNRRSGCD SDGDHLPSDK DVEKHHQERE SSKWHKVSEL 1020 KGDYGDTRRR AHKADPDWNR SDSDVDRERR DRSHGSSKSR KKVKREGSRE RTRDSESPVD 1080 DCDRDNYHRR RRRSSRSSWS DSNSYGDQTI DLHDRWDPGD E

Sequence ? help Back to Top

Protein Sequence Length: 1121 aa Download sequence

MAVAAVSYCK PSPFLGRLSS RLGKPPPQLC TEKPSLTSRV YALFWRSRKP AEPQEVSLSL  60
GDFTLTTSDA LDVSARKSEP KRILLSIVSS ISEVSSDEWD ACALDATGPE RSNPFLFHGF  120
LSSLEEAGCA VKETGWMPRH IIAKDDSENV LGVVPLYLKS HSYGEFVFDH SWADAYYSYG  180
SRYYPKFQCC VPFTPVTGPR ILLRDSLYKD QVFDIIISTL KDLAAKSQVS SVHITFSSED  240
EWYSLKERGF LPRIGMQYHW RNRNYKSFDD FLMDMKQSKR KNIRQERKKA KHWDTFYTFY  300
RNTTDNKWGT PYLTREFFHS MGSKMGDKVL LVIAEEGDEL VAGALNLIGG DTIYGRLWGC  360
HPKAYYPSLH FEACYYQAIE AAIELNLNTV EAGAQGEHKI QRGYLPVKTY SSHYLPDEGF  420
RNAIGDFVMR EATQVELVMK LIRESGPFKE EFRLSLAFGM SELITGEYEE AGGGGGEGVE  480
EDRTCDGEKQ QLGAESMGSA SSRKEKRKAA KKMKRKQLRM EAAVREREEE EAKMNDPDEL  540
RRMEEAEREE EERRERERRE FEERERAWLE AMEKKRKEEE EGEEEERRRK ALEESQRLQE  600
VGNGNEQEEE DGDWEYIEEG PAEIIWQGNE IIVKKKRVKV PKKDATLQRL KEDADRPTSN  660
PLPPQSEAFA DCRNSSLPSA QQILENVAQQ VPNFGTEQDK AHCPFHLKTG ACRFGQRCSR  720
VHFYPDVSCT LLIRNMYNGP GLAWEQDEGL EHTDEEVERS YEEFYEDVHT EFLKFGEIVN  780
FKVCRNGSFH LRGNVYIHYK SLDSAVLAYQ SINGRFFASK QVNCEYVNVT RWKVAICGEY  840
MRSRYKTCSH GTACNFIHCF RNPGGDYEWA DWDKPPPRYW VKNMVALFGH SEEHGFERST  900
LESSGPSRNS NLTDVDSKRN QSQRSRSRET GSGRYHRNRG GENGFEISRS SEEYDIYDKK  960
QRKRTNGERK NEDKLSPRYS HRSNRRSGCD SDGDHLPSDK DVEKHHQERE SSKWHKVSEL  1020
KGDYGDTRRR AHKADPDWNR SDSDVDRERR DRSHGSSKSR KKVKREGSRE RTRDSESPVD  1080
DCDRDNYHRR RRRSSRSSWS DSNSYGDQTI DLHDRWDPGD E

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	553	560	RRERERRE
2	574	590	KKRKEEEEGEEEERRRK
3	575	591	KKRKEEEEGEEEERRRK
4	958	964	DKKQRKR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10320.1	1e-139	C3H family protein