PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OWM84849.1

Organism

Punica granatum

Taxonomic ID

22663

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica

Family

MYB

Protein Properties

Length: 683aa MW: 75904.9 Da PI: 7.5639

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OWM84849.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	81.3	2.5e-25	31	129	2	89
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg............ 88 a +kdrh ++T++g Rd R+ ls++ a+ f+ +qd LG+d++skt+eWL+++a ++i +l +++ss ++++ ++ s++n+s + OWM84849.1 31 ARGKDRHGEVCTAGGIRDLRIQLSVPAAIIFYNVQDLLGYDQPSKTVEWLINAASESISQLSSLKSSFSNAA----EQLSDKNKSVRvgedesrpesyh 125 678*************************************************************66666444....33333333333333322122222 PP TCP 89 ...k 89 + OWM84849.1 126 ldlN 129 2221 PP
2	Myb_DNA-binding	42.7	1.3e-13	333	380	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W+ eEd +l +++k++G +W+ ++ g++R++k+c++rw +yl OWM84849.1 333 KGPWSVEEDTKLTNYIKRYGIWNWSHMPKAAGLKRSGKSCRLRWMNYL 380 79****************99**********************97 PP
3	Myb_DNA-binding	49.5	1e-15	386	431	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+++++E+ ++++++qlG++ W +Ia+ ++ gRt++++k++w+++l OWM84849.1 386 RGNFSEDEQRVIIKLHQQLGNR-WQAIAASLP-GRTDNEIKNFWNSHL 431 89******************.*****.**********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 683 aa Download sequence
MASAGGGGAA AKTLLTWRGS GIPAKDAPRA ARGKDRHGEV CTAGGIRDLR IQLSVPAAII 60 FYNVQDLLGY DQPSKTVEWL INAASESISQ LSSLKSSFSN AAEQLSDKNK SVRVGEDESR 120 PESYHLDLNN DPNSPDSPNP DQRRCISGSE SACSTGLPLQ SSLLTIPEET SRGESALLRL 180 EFVKKLPATI FTGSWLVDEE KNPIKLRLLD ERTNKIVRAD PLSSERIEIV VLDGDFGCDE 240 PEEDWTEQDF NACIIRETEG RMPLLTGELS VTLQEGVACL GGIAFTDNSS WTRSNKFRLG 300 ARIIRQASAE GARIKEARSE SFVVNAHCGP LKKGPWSVEE DTKLTNYIKR YGIWNWSHMP 360 KAAGLKRSGK SCRLRWMNYL RPNIRRGNFS EDEQRVIIKL HQQLGNRWQA IAASLPGRTD 420 NEIKNFWNSH LKKRVLQTDK VIQNPPSSES GGSCSSITFN ATAVQQAKME WQHEQGKNTK 480 NSQYLKASRR IFAATMQSSP FAASNEGCMQ VEMSSDANIG HAENHDTLSW VLFHQNAGEV 540 VLSMEIQTIA KEIVRACARD SRSLTLMARA LSNVSDTETW EFALDSLSLQ HASCRDDYEI 600 LSVNVLKFCS QILDIDVTRK CLKSLAMQSK SKEVGRASMM DSWIRDDMLV ARSEGEMVVK 660 NLLDAKLLKC PYFRLCSCKE ITS

Sequence ? help Back to Top

Protein Sequence Length: 683 aa Download sequence

MASAGGGGAA AKTLLTWRGS GIPAKDAPRA ARGKDRHGEV CTAGGIRDLR IQLSVPAAII  60
FYNVQDLLGY DQPSKTVEWL INAASESISQ LSSLKSSFSN AAEQLSDKNK SVRVGEDESR  120
PESYHLDLNN DPNSPDSPNP DQRRCISGSE SACSTGLPLQ SSLLTIPEET SRGESALLRL  180
EFVKKLPATI FTGSWLVDEE KNPIKLRLLD ERTNKIVRAD PLSSERIEIV VLDGDFGCDE  240
PEEDWTEQDF NACIIRETEG RMPLLTGELS VTLQEGVACL GGIAFTDNSS WTRSNKFRLG  300
ARIIRQASAE GARIKEARSE SFVVNAHCGP LKKGPWSVEE DTKLTNYIKR YGIWNWSHMP  360
KAAGLKRSGK SCRLRWMNYL RPNIRRGNFS EDEQRVIIKL HQQLGNRWQA IAASLPGRTD  420
NEIKNFWNSH LKKRVLQTDK VIQNPPSSES GGSCSSITFN ATAVQQAKME WQHEQGKNTK  480
NSQYLKASRR IFAATMQSSP FAASNEGCMQ VEMSSDANIG HAENHDTLSW VLFHQNAGEV  540
VLSMEIQTIA KEIVRACARD SRSLTLMARA LSNVSDTETW EFALDSLSLQ HASCRDDYEI  600
LSVNVLKFCS QILDIDVTRK CLKSLAMQSK SKEVGRASMM DSWIRDDMLV ARSEGEMVVK  660
NLLDAKLLKC PYFRLCSCKE ITS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G21440.1	8e-47	MYB family protein