PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OWM84861.1

Organism

Punica granatum

Taxonomic ID

22663

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica

Family

TCP

Protein Properties

Length: 1134aa MW: 126804 Da PI: 4.9999

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OWM84861.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	72.7	1.1e-22	31	132	1	100
TCP 1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec...eaesssssasnsssgkaaksaak 96 aag+kdr+ + T ++ Rd R+ ls++ a+ f+ +qd LG+d++skt+eWL+ +a ++i +l +++ss +s++ +++++s+s+++++s + ++++ OWM84861.1 31 AAGRKDRQGEVRTTGDIRDLRIQLSVPAAIIFYNVQDLLGYDQPSKTVEWLIDAASESISQLSSLKSSFSSAAeqlSDKNKSVSVGEDES-RPESFHLD 128 689**************************************************************5555544422333333333332222.33333333 PP TCP 97 skks 100 +++ OWM84861.1 129 LNND 132 3333 PP
2	Myb_DNA-binding	44.2	4.4e-14	334	383	1	48
TSSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqkyl 48 +g+W+ eEd +l +++k++ +W +Ia+ ++ gRt++++k++w+++l OWM84861.1 334 KGPWSVEEDTKLTNYIKRYECTyccRWQAIAASLP-GRTDNEIKNFWNTHL 383 79****************99*********.**********996 PP

Sequence ? help Back to Top
Protein Sequence Length: 1134 aa Download sequence
MMASAGGGGA VAKTLLRWRG SGIPAKDAPR AAGRKDRQGE VRTTGDIRDL RIQLSVPAAI 60 IFYNVQDLLG YDQPSKTVEW LIDAASESIS QLSSLKSSFS SAAEQLSDKN KSVSVGEDES 120 RPESFHLDLN NDPNSPDCPN PDQQWCISCS ESACSTCLPL QKSSLTIPEE TSRGESALLR 180 LEFVNKLPAN IFTGSWLVDE ENNPIKLRLL NERTHKIVSA HPLSSERIEI VVLDGDFGCH 240 EPEEDWTEQD FSACIIRETE GRRPLLTGEL SVTLREGVAC LGGIAFTDNS SWTRSNKFRL 300 GARIIRQAPA EGARIKEARS ESFVVNDHCG PLKKGPWSVE EDTKLTNYIK RYECTYCCRW 360 QAIAASLPGR TDNEIKNFWN THLKKRVLQT EKNPPSSESG GSCSSITLNA TAVQQGRRTL 420 KIKKVPSHNG QNQREDIFTL ALGNISNAMQ CLGDNADPML DGCSKGIDIE PIPLEVQLQS 480 DLDNPLSESF QEDIHFAVAT MQSSPFAASD EGCMQVEMSS DANIGHAENH DTLSWELFHQ 540 NAGEVMLSME IQTIAKEIVR ACARDSRSLT LMARALRNVS DTEIWEYALD SLSLQHASCR 600 DDYENLSVNV LKFCIELLDD DVTRNCLKSL AMQSKSKEVG RASMLDSWIG DGMLVTRSEG 660 EIIVKNLLDA KLLELSENGE LVKFVDIGQH LVHLALHPEE GSELLMQGGL GLVEPTEVEE 720 WERTKEICLM HNNLTEFPEN PRCPSLLPLF LQRNHKLRVI PSLFFRHMPA LEVLNLSRTH 780 IKSLPDSLFQ LVSLQRLFLN ECILLRTLSA KVGGLRNLEV LDLKGTKLMG LPKEIEQLVN 840 LTCLEVSILS TSCKLSEEPH PLIPSRVLLS LSQLEELNID VGPDAERWDS CMEVLVDGIC 900 SLGRLNTLKF YFTKVELMRQ FDPTSLSHFR IIIGKHIGCI MSRLPPDIEF KLECWDRYLK 960 YIHGKGILQD VMKVLRKADA FFLDRHTDLK KLSDFGKENL EYLRCCVLGE CNELQVLNDG 1020 EDFGEQGDRI CLGSLKYLYV YYVKNLEAIW RGPVQKGSLS CLKSLTLRTC PKITSIFTRE 1080 LLENLCNLEE LTLEDCPALV SLVSCKRCSL RNILLPAQVE EDEASLPAAI DEHL

Sequence ? help Back to Top

Protein Sequence Length: 1134 aa Download sequence

MMASAGGGGA VAKTLLRWRG SGIPAKDAPR AAGRKDRQGE VRTTGDIRDL RIQLSVPAAI  60
IFYNVQDLLG YDQPSKTVEW LIDAASESIS QLSSLKSSFS SAAEQLSDKN KSVSVGEDES  120
RPESFHLDLN NDPNSPDCPN PDQQWCISCS ESACSTCLPL QKSSLTIPEE TSRGESALLR  180
LEFVNKLPAN IFTGSWLVDE ENNPIKLRLL NERTHKIVSA HPLSSERIEI VVLDGDFGCH  240
EPEEDWTEQD FSACIIRETE GRRPLLTGEL SVTLREGVAC LGGIAFTDNS SWTRSNKFRL  300
GARIIRQAPA EGARIKEARS ESFVVNDHCG PLKKGPWSVE EDTKLTNYIK RYECTYCCRW  360
QAIAASLPGR TDNEIKNFWN THLKKRVLQT EKNPPSSESG GSCSSITLNA TAVQQGRRTL  420
KIKKVPSHNG QNQREDIFTL ALGNISNAMQ CLGDNADPML DGCSKGIDIE PIPLEVQLQS  480
DLDNPLSESF QEDIHFAVAT MQSSPFAASD EGCMQVEMSS DANIGHAENH DTLSWELFHQ  540
NAGEVMLSME IQTIAKEIVR ACARDSRSLT LMARALRNVS DTEIWEYALD SLSLQHASCR  600
DDYENLSVNV LKFCIELLDD DVTRNCLKSL AMQSKSKEVG RASMLDSWIG DGMLVTRSEG  660
EIIVKNLLDA KLLELSENGE LVKFVDIGQH LVHLALHPEE GSELLMQGGL GLVEPTEVEE  720
WERTKEICLM HNNLTEFPEN PRCPSLLPLF LQRNHKLRVI PSLFFRHMPA LEVLNLSRTH  780
IKSLPDSLFQ LVSLQRLFLN ECILLRTLSA KVGGLRNLEV LDLKGTKLMG LPKEIEQLVN  840
LTCLEVSILS TSCKLSEEPH PLIPSRVLLS LSQLEELNID VGPDAERWDS CMEVLVDGIC  900
SLGRLNTLKF YFTKVELMRQ FDPTSLSHFR IIIGKHIGCI MSRLPPDIEF KLECWDRYLK  960
YIHGKGILQD VMKVLRKADA FFLDRHTDLK KLSDFGKENL EYLRCCVLGE CNELQVLNDG  1020
EDFGEQGDRI CLGSLKYLYV YYVKNLEAIW RGPVQKGSLS CLKSLTLRTC PKITSIFTRE  1080
LLENLCNLEE LTLEDCPALV SLVSCKRCSL RNILLPAQVE EDEASLPAAI DEHL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G18390.1	2e-14	TCP family protein