PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OWM84985.1
Organism
Punica granatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica
Family GRAS
Protein Properties Length: 602aa    MW: 65604 Da    PI: 4.7979
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OWM84985.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS452.62.5e-1382285911374
        GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 
                 lv++L++cAeav++++l+la++l++ +  la +++ +m+++a++f+eALa+r+++    +y    p+++ + +s + +     f+e++P+lkf+h+taN
  OWM84985.1 228 LVHTLMACAEAVQQENLKLAEELVKYVGLLAVSQAGAMRKVATCFAEALARRIYK----IY----PQDSLDATSYNDILE-MHFYETCPYLKFAHFTAN 317
                 689***************************************************9....55....444443344444444.35**************** PP

        GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkp 198
                 qaIlea+ +++rvH+iDf+++qG+QWpaL+qaLa Rp+gpp +R+Tg+g+p+++++++l+++g++La++Ae++gv+fef+  va++l+dle+ +L+++p
  OWM84985.1 318 QAILEAFGTASRVHVIDFSLKQGMQWPALMQALALRPGGPPAFRLTGIGPPQPDNTDALQQIGWKLAQLAETIGVEFEFRGYVATSLADLEPAMLDLRP 416
                 *********************************************************************************9999************** PP

        GRAS 199 ..gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreiv 295
                    Ea+aVn+v++lhrll++++++e+    vL+ +  ++Pk++++veqea+hn++ Fl+rf+eal+yys+lfdsle +  + ++++ +++ ++lgr+i+
  OWM84985.1 417 peVEAVAVNSVFELHRLLARPGAIEK----VLNSIEAMKPKIITIVEQEANHNGPVFLDRFTEALHYYSSLFDSLEGSGRTLENQDLVMSDVYLGRQIC 511
                 9999**********************....***********************************************977778**************** PP

        GRAS 296 nvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                 nvvaceg +r+erhetl++Wr+r+++aGF pvpl+++a kqa +ll  ++ ++gyrvee++g+l+lgW++rpL+++SaWr
  OWM84985.1 512 NVVACEGPDRFERHETLAQWRSRMGSAGFDPVPLGSNAFKQAGMLLDLFSgGEGYRVEENNGCLMLGWHTRPLIATSAWR 591
                 *******************************************************************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 602 aa     Download sequence    
MKKRHHQDSC SSSYGGAGSS SSAGKAKAWE EEQDPTGGMD ELLAVLGYKV RSSDMADVAL  60
KLEQLEMVMG QEDSVSFSHL QNDTVHYNPS DLSSWVQTML SELNAPIPDQ VQPLHTDLDF  120
SGLQNRFGAS ESTQPQLGFS DDSEYDLSAI PGVAAYPPPP PPPQRPAPQQ LQQQPEPARG  180
KRMKTSIGPS NPNLNLSSSS SSSSSAVGAP ESTRPVVLVD SQEAGVRLVH TLMACAEAVQ  240
QENLKLAEEL VKYVGLLAVS QAGAMRKVAT CFAEALARRI YKIYPQDSLD ATSYNDILEM  300
HFYETCPYLK FAHFTANQAI LEAFGTASRV HVIDFSLKQG MQWPALMQAL ALRPGGPPAF  360
RLTGIGPPQP DNTDALQQIG WKLAQLAETI GVEFEFRGYV ATSLADLEPA MLDLRPPEVE  420
AVAVNSVFEL HRLLARPGAI EKVLNSIEAM KPKIITIVEQ EANHNGPVFL DRFTEALHYY  480
SSLFDSLEGS GRTLENQDLV MSDVYLGRQI CNVVACEGPD RFERHETLAQ WRSRMGSAGF  540
DPVPLGSNAF KQAGMLLDLF SGGEGYRVEE NNGCLMLGWH TRPLIATSAW RLAPTVAPTG  600
AQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01570.10.0GRAS family protein