PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OWM85082.1
Organism
Punica granatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica
Family M-type_MADS
Protein Properties Length: 190aa    MW: 21618.2 Da    PI: 4.2949
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OWM85082.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF55.47.9e-181051243
                ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS
      SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43
                 i n+s r++tf kR++g+lKKA+EL +LC++e + i+++++
  OWM85082.1 10 LITNESTRKTTFRKRKAGLLKKANELTTLCGVEGCAIVYGPN 51
                599*************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 190 aa     Download sequence    
MGRKKVRLEL ITNESTRKTT FRKRKAGLLK KANELTTLCG VEGCAIVYGP NEPDPHVWPS  60
REEAEQVLTR FKSLPAKKQA KHMMNHEECL DKNLMILEGK VEEGVRQNRD LELEMLLDEL  120
LEEDGNDERL IEMMSLEDMK DLCGFLDKRL EEIPKDDGND GSSHVASSEN LGDGDEDEDI  180
EEEEVSVSDD
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1325RKKVRLELITNESTRKTTFRKRK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22590.22e-29M-type_MADS family protein