PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OWM85417.1

Organism

Punica granatum

Taxonomic ID

22663

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica

Family

MIKC_MADS

Protein Properties

Length: 213aa MW: 23721.9 Da PI: 8.484

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OWM85417.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	86.1	1.9e-27	10	59	2	51
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 +ien + r+vtfskRr g++KKAeELSvLCda+v +iifss gkl+e+ss OWM85417.1 10 KIENATARHVTFSKRRRGLFKKAEELSVLCDADVGLIIFSSAGKLFEFSS 59 69**********************************************96 PP
2	K-box	44.6	6.2e-16	106	173	33	100
K-box 33 reqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100 +++R + Ge+L+ L+ L qLe++Le++lk++ +kK+e ++++i++lq+k el ++ +L+++++e OWM85417.1 106 HKLRLMRGEELQGLNTDKLDQLEKALEEGLKRVITKKTEKITTEIQDLQQKGTELALQKGKLSQQVAE 173 578999***********************************************************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 213 aa Download sequence
MAREKICIRK IENATARHVT FSKRRRGLFK KAEELSVLCD ADVGLIIFSS AGKLFEFSSS 60 SMSDILERYR LLSKNLEKLQ QPSQDTPLLE NGGSSGLSKE VVDESHKLRL MRGEELQGLN 120 TDKLDQLEKA LEEGLKRVIT KKTEKITTEI QDLQQKGTEL ALQKGKLSQQ VAEIRRLKQV 180 AANSETSSEE DQSSELPTHG SSSNCSNTSL KLG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22540.1	1e-69	MIKC_MADS family protein