PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OWM85762.1

Organism

Punica granatum

Taxonomic ID

22663

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica

Family

MYB

Protein Properties

Length: 274aa MW: 30866.4 Da PI: 5.5648

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OWM85762.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	56.1	8.3e-18	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd+ l +++q+G g+W++ ++ g+ R++k+c++rw +yl OWM85762.1 14 KGPWTPEEDQVLMSYIQQHGHGNWRALPKLAGLLRCGKSCRLRWINYL 61 79****************************99**********97 PP
2	Myb_DNA-binding	53.4	6e-17	67	112	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T+eE++ +++++++lG++ W++Ia++++ gRt++++k+ w+++l OWM85762.1 67 RGNFTQEEEDTIIHLHEMLGNR-WSAIAAKLP-GRTDNEIKNVWHTHL 112 89******************.*****.**********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 274 aa Download sequence
MVRAPCCEKM GLKKGPWTPE EDQVLMSYIQ QHGHGNWRAL PKLAGLLRCG KSCRLRWINY 60 LRPDIKRGNF TQEEEDTIIH LHEMLGNRWS AIAAKLPGRT DNEIKNVWHT HLKKRLKHSG 120 ASPKHESDTG RKSQPSSSTS TLQESQTPAS RPMSPQPSSS EISSVTETST VARENNNNLE 180 VKSEQADFSM ESLPMIDDSF WTDPMSNSPS GESSDFSTLT NSTVHIQFPF IESADMSNGE 240 LLWNDNHVLN MDDGMEFWYD LFIGAGGVQE LPDF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G23250.1	3e-81	MYB family protein