PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OWM85948.1

Organism

Punica granatum

Taxonomic ID

22663

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica

Family

C2H2

Protein Properties

Length: 421aa MW: 46504.7 Da PI: 5.8563

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OWM85948.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.9	0.00071	88	109	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 +Cp+C+k F + + H+++H OWM85948.1 88 TCPYCKKEFDSEKAMSGHLKVH 109 7******************999 PP

Sequence ? help Back to Top
Protein Sequence Length: 421 aa Download sequence
MEKPQPGASL EPDNAGGEAG GRQVAAEEVA SSTLELFRCE FCLKEFSSGK ALGGHKRIHS 60 QPRKKQQRKA KRLSNQFEAK VEREPITTCP YCKKEFDSEK AMSGHLKVHK DRVWKGIQAP 120 EGYTGSVSPN PNCPCSNLGP VTVENLSELK DGDHVDNESV VDAEVWPMVS GRTDSSLDDR 180 ELHVENSEDD KWNEGKLEDE EVAEILLMFG NNPSRFSSQL ERDAETDRNR LLGSTKSLDD 240 DHTEDLPPLE ASSKIQESLE RAVTEPEKID GKKPKKKKKK VQDLETEAVG GDDDGNVSSI 300 KVYNCEACNR TFTSRQAYGG HVSSHNKVKK ITRSPAKPES APASIVLSGQ GVNQGQSLSD 360 SRGNQVVRPW RYPDIDLNEP PAEEEEKGHL LHLGLSRSRS LPVEFGANKC QSILVNRLPS 420 K

Sequence ? help Back to Top

Protein Sequence Length: 421 aa Download sequence

MEKPQPGASL EPDNAGGEAG GRQVAAEEVA SSTLELFRCE FCLKEFSSGK ALGGHKRIHS  60
QPRKKQQRKA KRLSNQFEAK VEREPITTCP YCKKEFDSEK AMSGHLKVHK DRVWKGIQAP  120
EGYTGSVSPN PNCPCSNLGP VTVENLSELK DGDHVDNESV VDAEVWPMVS GRTDSSLDDR  180
ELHVENSEDD KWNEGKLEDE EVAEILLMFG NNPSRFSSQL ERDAETDRNR LLGSTKSLDD  240
DHTEDLPPLE ASSKIQESLE RAVTEPEKID GKKPKKKKKK VQDLETEAVG GDDDGNVSSI  300
KVYNCEACNR TFTSRQAYGG HVSSHNKVKK ITRSPAKPES APASIVLSGQ GVNQGQSLSD  360
SRGNQVVRPW RYPDIDLNEP PAEEEEKGHL LHLGLSRSRS LPVEFGANKC QSILVNRLPS  420
K

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	272	280	KKPKKKKKK
2	273	280	KPKKKKKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G26940.1	4e-10	C2H2 family protein