PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OWM86134.1

Organism

Punica granatum

Taxonomic ID

22663

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica

Family

C3H

Protein Properties

Length: 415aa MW: 45585.7 Da PI: 8.8057

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OWM86134.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	34.6	3.1e-11	22	47	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ++++ C+++ rtG C++G++C+F+H+ OWM86134.1 22 PGEPDCSYYIRTGLCRFGATCRFNHP 47 5789*********************8 PP
2	zf-CCCH	29.2	1.6e-09	75	95	7	27
SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 7 rffartGtCkyGdrCkFaHgp 27 +++++tGtCk+G++CkF+H++ OWM86134.1 75 CYYLKTGTCKFGATCKFHHPR 95 58*****************96 PP
3	zf-CCCH	35.2	2e-11	119	141	5	27
--SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHgp 27 +C +++rtG+Ck+G++CkF+H++ OWM86134.1 119 ECAYYLRTGQCKFGSTCKFHHPQ 141 6********************97 PP
4	zf-CCCH	37.5	3.9e-12	278	302	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C+f+++tG Ck+G+ CkF+H++ OWM86134.1 278 QPECQFYMKTGDCKFGAVCKFHHPR 302 799********************96 PP
5	zf-CCCH	40.2	5.5e-13	322	348	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++lC f++r+G+Ck+G++CkF H++ OWM86134.1 322 PGEPLCIFYSRYGICKFGPSCKFDHPM 348 589**********************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 415 aa Download sequence
MWQINLRTSS EAVESGPYPE RPGEPDCSYY IRTGLCRFGA TCRFNHPANR KLAIANARMH 60 GEYPERIGQP ECQACYYLKT GTCKFGATCK FHHPRDKAGI AGKVSLNAIG YPVRPNEMEC 120 AYYLRTGQCK FGSTCKFHHP QPVNMMVSLR GSPVYPSLHS PTTPSQQSYL GGVTNWSRAS 180 FIASPRWQGP SSYAPLILPQ SMVSVPSWNT YSGQLGTVSS PDNQLKMAGS NQMYGTSHQS 240 DTMSAGSQGP FSPYRSRSVP LGFYALQREN IFPERAGQPE CQFYMKTGDC KFGAVCKFHH 300 PRERLIPPPD CLLSPIGLPL RPGEPLCIFY SRYGICKFGP SCKFDHPMGI FGNNLSASSS 360 SISPLRLLFA SSPGTTALAL SSDGLVDAGQ GRPRRLSLSE TRQMPPNDDS IDTEG

Sequence ? help Back to Top

Protein Sequence Length: 415 aa Download sequence

MWQINLRTSS EAVESGPYPE RPGEPDCSYY IRTGLCRFGA TCRFNHPANR KLAIANARMH  60
GEYPERIGQP ECQACYYLKT GTCKFGATCK FHHPRDKAGI AGKVSLNAIG YPVRPNEMEC  120
AYYLRTGQCK FGSTCKFHHP QPVNMMVSLR GSPVYPSLHS PTTPSQQSYL GGVTNWSRAS  180
FIASPRWQGP SSYAPLILPQ SMVSVPSWNT YSGQLGTVSS PDNQLKMAGS NQMYGTSHQS  240
DTMSAGSQGP FSPYRSRSVP LGFYALQREN IFPERAGQPE CQFYMKTGDC KFGAVCKFHH  300
PRERLIPPPD CLLSPIGLPL RPGEPLCIFY SRYGICKFGP SCKFDHPMGI FGNNLSASSS  360
SISPLRLLFA SSPGTTALAL SSDGLVDAGQ GRPRRLSLSE TRQMPPNDDS IDTEG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02830.1	1e-175	C3H family protein