PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OWM86218.1
Organism
Punica granatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica
Family HD-ZIP
Protein Properties Length: 248aa    MW: 27898.6 Da    PI: 8.4048
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OWM86218.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox37.93e-121131412856
                 HHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
    Homeobox  28 eereeLAkklgLterqVkvWFqNrRakek 56 
                 +++e LA++l+L  rqV vWFqNrRa+ k
  OWM86218.1 113 KQKEALAMELKLRPRQVEVWFQNRRARSK 141
                 799************************98 PP
2HD-ZIP_I/II93.52.4e-3075175189
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLep............erKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekevee 86 
                  +kk+rlskeq++lLEesF+++++L++            ++K++la eL+l+prqv+vWFqnrRAR k+kq+E ++e+ kr++ +l+e+n+rL++evee
   OWM86218.1  75 RKKLRLSKEQSRLLEESFRRNHTLNTvksqysflrslhKQKEALAMELKLRPRQVEVWFQNRRARSKLKQTELECEYFKRWFGSLTEQNRRLQREVEE 172
                  69**********************9544444444444489********************************************************** PP

  HD-ZIP_I/II  87 Lre 89 
                  Lr+
   OWM86218.1 173 LRA 175
                  *94 PP
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    
MPLFAALPKN NLTCCDVKSG SFFCDEGENI NGFSVRDLDI NQVPSDADGE EWMMMNACTE  60
DEDESSSING GGPPRKKLRL SKEQSRLLEE SFRRNHTLNT VKSQYSFLRS LHKQKEALAM  120
ELKLRPRQVE VWFQNRRARS KLKQTELECE YFKRWFGSLT EQNRRLQREV EELRAMKVGP  180
PTVLSPHSSQ PLPASTLTMC PRCERVSSTE PISTANVPVT TTAVAHLSSK PSSGPASPLQ  240
PRQSPAAC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1136144RRARSKLKQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01430.19e-66HD-ZIP family protein