PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OWM86303.1

Organism

Punica granatum

Taxonomic ID

22663

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica

Family

MIKC_MADS

Protein Properties

Length: 258aa MW: 30056.1 Da PI: 9.5854

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OWM86303.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	81.3	6.2e-26	10	58	2	50
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 rienk+ rqvtf+kRr+g++KK +ELSvLCda++ +i+fsstgkl+ y OWM86303.1 10 RIENKTTRQVTFAKRRAGLFKKTNELSVLCDAQIGLIVFSSTGKLFQYT 58 8*********************************************997 PP
2	K-box	68	3.1e-23	81	171	9	99
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 + + ++++ q el+++++e++nLq ++ h+ +dL++ +++L++Leqq+e sl+k+R++K+ell +q+++l++kek+lq+en+++ ++++ OWM86303.1 81 QPTDDQQQVQAELRRMRRETHNLQLSLQHYTANDLSTVRIEDLNNLEQQVEYSLNKVRARKYELLQQQTDNLRRKEKMLQDENEKIFHMIK 171 55677899****************************************************************************9988775 PP

Sequence ? help Back to Top
Protein Sequence Length: 258 aa Download sequence
MGRGKIAIRR IENKTTRQVT FAKRRAGLFK KTNELSVLCD AQIGLIVFSS TGKLFQYTSE 60 ASSMEQIISR YLTATGSQMP QPTDDQQQVQ AELRRMRRET HNLQLSLQHY TANDLSTVRI 120 EDLNNLEQQV EYSLNKVRAR KYELLQQQTD NLRRKEKMLQ DENEKIFHMI KNQHQVVLEH 180 HQNEQLALVS DPKPEESRNV LDQFPFFGEE QPSSVLRLAA QLPPTFRPYH LQPTQPNLQD 240 FSLHQPNNGI SLRHLNLL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G23260.2	2e-67	MIKC_MADS family protein