PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OWM86415.1
Organism
Punica granatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica
Family HD-ZIP
Protein Properties Length: 297aa    MW: 33234.2 Da    PI: 7.8978
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OWM86415.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.61e-18136190256
                 T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
    Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                 rk+ +++k+q  +Lee F+++++++ +++  LAk+lgL  rqV vWFqNrRa+ k
  OWM86415.1 136 RKKLRLSKDQSAVLEESFREHNTLNPKQKLALAKQLGLRPRQVEVWFQNRRARTK 190
                 788899***********************************************98 PP
2HD-ZIP_I/II128.33.2e-41136225191
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                  +kk+rlsk+q+++LEesF+e+++L+p++K +la++Lgl+prqv+vWFqnrRARtk+kq+E d+e+Lkr++++l+een+rL+kev+eLr +l
   OWM86415.1 136 RKKLRLSKDQSAVLEESFREHNTLNPKQKLALAKQLGLRPRQVEVWFQNRRARTKLKQTEIDCEFLKRCCENLTEENRRLQKEVQELR-AL 225
                  69*************************************************************************************9.55 PP
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    
MIAAEKEDLG LSLSLTSFSQ SHHHQQRSLP SSNNHQKIPW INAFSQFDHR SSDSCHRSGA  60
PLFLWGIDVN RSPNAAGRGD DDEEEPGVSS PNSTLSSVSG KRSERELDPA AGTDEHEIER  120
ASSRGISDEE DGDNSRKKLR LSKDQSAVLE ESFREHNTLN PKQKLALAKQ LGLRPRQVEV  180
WFQNRRARTK LKQTEIDCEF LKRCCENLTE ENRRLQKEVQ ELRALKLSPQ FYMQMAPPTT  240
LTMCPSCERV GVPQPSAASG LDVTRPITMS SGHHRPMPIN PWAQATPVAR AALRPGL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1135141SRKKLRL
2185193RRARTKLKQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16780.11e-92HD-ZIP family protein