PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OWM86587.1

Organism

Punica granatum

Taxonomic ID

22663

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica

Family

MYB

Protein Properties

Length: 298aa MW: 32453.1 Da PI: 7.2073

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OWM86587.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	39.6	1.2e-12	14	62	1	48
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 rg+W++eEd l + + G+ +W + +++ g++R++k+c++rw++yl OWM86587.1 14 RGPWSPEEDAALRSYLEAQGTAgNWIALPKKAGLRRCGKSCRLRWLNYL 62 89****************999**********************97 PP
2	Myb_DNA-binding	45.2	2.2e-14	69	111	2	46
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g +T+eEd +v + ++ G++ W+ Ia+ ++ gRt++++k++w++ OWM86587.1 69 GGFTEEEDNAIVSLYAEIGSR-WSVIASQLP-GRTDNDVKNYWNT 111 569****************.*****.*********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 298 aa Download sequence
MGRAPCCDKA NVKRGPWSPE EDAALRSYLE AQGTAGNWIA LPKKAGLRRC GKSCRLRWLN 60 YLRPDIKHGG FTEEEDNAIV SLYAEIGSRW SVIASQLPGR TDNDVKNYWN TKLKKKLLSG 120 KINLPTSNNS ISTTNNGCSS SSLGTNSEFV PAPQNYNYQG FWAASEAKVD PAMYSALLTN 180 VQYGPSLNSH SPSAEIGSFV DFRGNIKPSV SQECSSTVNS SGNSPNSLGM VDYNRSVSFS 240 GNGRITGEDG GMNFGFGFSW DMINELLFDE KLAGEISPNA LAEVNPQVLN QSSINFQY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G36890.1	3e-73	MYB family protein